RNA id: TU74715


Basic Information

Item Value
RNA id TU74715
length 450
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G59746
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3199622 ~ 3200478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTAAAGAGTAAATTATTCAccactgcagttttattagaGGTAGGGTTACTTCCAAAGTCAGAGAACGACCGATGGTAAACTCTGAGGTCCTCTCACCTGTCTGGCGGTCCAAAGCCTGGGTGAACTGGTTGATTGAAGGAGGCACCTTCAGACGCTTGTACAGGATGGACCTCTGCCTCTGCAGCCTGATGTAGCGAGGCCACTTCACGAAGCGCGTCAGATCACGCTTTGGCTGGATATCCTGACGATGCCATAGTTCTTGGGCCTCTTCTCGAACAAGGGGTTGACTACTTTCTTGGCCTCGTGTTTCTTGGCCACAGAAGGGGCCGGCGCCACCTTCTTTCCCTTAGCCTTCTTCCCCTTCGGCTGAAAGGAGGGAAAAGATGGGTTACCAACTGGGCAGCATTAGGACAGATGTAAACCCACCACAGGGCCGCGGGCGCCGAG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74674 lncRNA upstream 79433 3119812 ~ 3120189 (+) True G59718
TU74673 lncRNA upstream 81713 3117522 ~ 3117909 (+) True G59717
TU74672 lncRNA upstream 82170 3117214 ~ 3117452 (+) True G59716
TU74671 lncRNA upstream 82803 3116518 ~ 3116819 (+) True G59715
TU74670 lncRNA upstream 89740 3107800 ~ 3109882 (+) True G59714
TU74799 lncRNA downstream 279302 3479780 ~ 3480109 (+) True G59800
TU74831 lncRNA downstream 447851 3648329 ~ 3651107 (+) True G59821
TU74848 lncRNA downstream 488322 3688800 ~ 3689000 (+) True G59835
TU74849 lncRNA downstream 490357 3690835 ~ 3691175 (+) True G59836
TU74850 lncRNA downstream 491267 3691745 ~ 3692036 (+) True G59837
AMCG00019935 mRNA upstream 3407 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019931 mRNA upstream 38431 3158597 ~ 3161191 (+) True AMCG00019931
AMCG00019932 mRNA upstream 42081 3149094 ~ 3157541 (+) True AMCG00019932
AMCG00019929 mRNA upstream 52588 3142447 ~ 3147034 (+) True AMCG00019929
AMCG00019930 mRNA upstream 58339 3129929 ~ 3141283 (+) True AMCG00019930
AMCG00019937 mRNA downstream 1508 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019936 mRNA downstream 10779 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019934 mRNA downstream 40830 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019948 mRNA downstream 382595 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019951 mRNA downstream 856017 4056495 ~ 4072047 (+) True AMCG00019951
TU74243 other upstream 2121559 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2754092 441598 ~ 445530 (+) True G59305
TU74774 other downstream 40961 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 1623335 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2155294 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2157986 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2982234 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile