RNA id: TU74858



Basic Information


Item Value
RNA id TU74858
length 432
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G59845
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3845999 ~ 3846430 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTTGCTGGCCGGTCTGGTTCTGCTGCGGGACCGGCTGCGCTGTCTCTGGAGCCGAGTCCTGCCCAGGAGCCTGTAGTAATAAGACGGCCTTCCAGAACTCTTCCTGCCCGTCCCTGACATGCTGCTACCAAGCTCTGGGTATCGACAAGTGGTGTCCTGTTTTGCGAAACTCccacaaaaaaaaggtttccaagTCTGTCTTCTTTTAATTGGcagtgtctttttcttttttcaattagAGAAAAGTTATTCTCCCCATATCAGTATAGTATAACTGCATGGGCCGAGTCGCAGCTACTACCAGTGGCAATAAATACAGaaggaagacaaaacaaagaaacattggCTTCAGTGAGAGCAAAAGTATTGTAGTTTCCTTCCAATAGATAAGTGTGTTGTGCTTGGAGCTGAGAGAGGCTTGCTAGCATGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74854 lncRNA upstream 117302 3728372 ~ 3728697 (+) True G59841
TU74853 lncRNA upstream 122553 3722891 ~ 3723446 (+) True G59840
TU74851 lncRNA upstream 152540 3693057 ~ 3693459 (+) True G59838
TU74850 lncRNA upstream 153963 3691745 ~ 3692036 (+) True G59837
TU74849 lncRNA upstream 154824 3690835 ~ 3691175 (+) True G59836
TU74862 lncRNA downstream 104700 3951130 ~ 3951410 (+) True G59849
TU74871 lncRNA downstream 193085 4039515 ~ 4039920 (+) True G59857
TU74978 lncRNA downstream 861134 4707564 ~ 4734675 (+) True G59936
TU74979 lncRNA downstream 861134 4707564 ~ 4734675 (+) False G59936
TU75000 lncRNA downstream 904035 4750465 ~ 4752896 (+) True G59955
AMCG00019948 mRNA upstream 247444 3583073 ~ 3598555 (+) True AMCG00019948
AMCG00019934 mRNA upstream 594592 3241308 ~ 3251407 (+) True AMCG00019934
AMCG00019936 mRNA upstream 611584 3211257 ~ 3234415 (+) True AMCG00019936
AMCG00019937 mRNA upstream 638643 3201986 ~ 3207356 (+) True AMCG00019937
AMCG00019935 mRNA upstream 649784 3193787 ~ 3196215 (+) True AMCG00019935
AMCG00019951 mRNA downstream 210065 4056495 ~ 4072047 (+) True AMCG00019951
AMCG00019959 mRNA downstream 677926 4524356 ~ 4555905 (+) True AMCG00019959
AMCG00019961 mRNA downstream 712876 4559306 ~ 4587941 (+) True AMCG00019961
AMCG00019958 mRNA downstream 756865 4603295 ~ 4621533 (+) True AMCG00019958
AMCG00019957 mRNA downstream 784611 4631041 ~ 4650566 (+) True AMCG00019957
TU74774 other upstream 595937 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 2767936 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 3400469 441598 ~ 445530 (+) True G59305
TU75012 other downstream 977383 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 1509342 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 1512034 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 2336282 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 5937687 9784117 ~ 9788052 (+) True AMCG00020105

Expression Profile