RNA id: TU75242



Basic Information


Item Value
RNA id TU75242
length 392
RNA type TUCP
GC content 0.40
exon number 2
gene id G60137
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5355772 ~ 5361863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctgcagctgtagatcacgtgaaagcatatgatatgatatatttagattttcaaaaatcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtacaggaaacagagggtgtcgagtagaggagttgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggtctttactttttctaatctatattaatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaaataggtggctcagcagatacaatctcggcagcacaggctattcagagggacttagataatattcagttgtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75147 lncRNA upstream 179993 5174436 ~ 5175779 (+) True G60072
TU75107 lncRNA upstream 326925 4992638 ~ 5028847 (+) True G60038
TU75004 lncRNA upstream 555489 4796574 ~ 4800283 (+) True G59959
TU75001 lncRNA upstream 597125 4758285 ~ 4758647 (+) True G59956
TU75000 lncRNA upstream 602876 4750465 ~ 4752896 (+) True G59955
TU75309 lncRNA downstream 334764 5696627 ~ 5696853 (+) True G60201
TU75310 lncRNA downstream 338638 5700501 ~ 5700840 (+) True G60202
TU75326 lncRNA downstream 430606 5792469 ~ 5792880 (+) True G60215
TU75340 lncRNA downstream 628367 5990230 ~ 5990491 (+) True G60228
TU75369 lncRNA downstream 737613 6099476 ~ 6099901 (+) True G60257
AMCG00019991 mRNA upstream 8874 5342576 ~ 5346898 (+) True AMCG00019991
AMCG00019988 mRNA upstream 22741 5320935 ~ 5333031 (+) True AMCG00019988
AMCG00019986 mRNA upstream 83579 5238988 ~ 5272193 (+) True AMCG00019986
AMCG00019979 mRNA upstream 188921 5161959 ~ 5166851 (+) True AMCG00019979
AMCG00019977 mRNA upstream 198506 5153144 ~ 5157266 (+) True AMCG00019977
AMCG00019998 mRNA downstream 599358 5961221 ~ 5973472 (+) True AMCG00019998
AMCG00019999 mRNA downstream 661424 6023287 ~ 6032040 (+) True AMCG00019999
AMCG00020001 mRNA downstream 745131 6106994 ~ 6114196 (+) True AMCG00020001
AMCG00020004 mRNA downstream 765136 6126999 ~ 6127406 (+) True AMCG00020004
AMCG00020000 mRNA downstream 820836 6182699 ~ 6187889 (+) True AMCG00020000
TU75012 other upstream 519975 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 2105710 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 4277709 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 4910242 441598 ~ 445530 (+) True G59305
TU75390 other downstream 820849 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 4422254 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 7157901 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 7173675 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 7253929 12615792 ~ 12619817 (+) True G61491

Expression Profile