RNA id: TU75384


Basic Information

Item Value
RNA id TU75384
length 2209
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G60272
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6165113 ~ 6172480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCTTTGTAAATCCAATAAACATGTATACTCTTGATATCAGCTAATTTTAAGCTTGATAGCAATTTACCTAAATCTGATTTCAACCTTCTGCTACATAACCACTTAAACATTCCTGCTatcaaacattcaaaaacagcttCCGGACAATTCAGTTCACCCAGCCTTAATTCTGAATATGATGCTTATAATAACTATAGATCTTTATTTAAAGAGAGCTTCAGCTTTAGATGATATAAACAGATACAATGGGGTTCTGCCAAATTTTATACATGAATTGTGTGGTTGTCACCCTACAAATCTATTGTAAGATTTCCCTTACACCATGAGACATGCGTATAAACTTCTCCATTCCACCTTTCACAAcctaatgtaaatatttaatggtgTAATTTTAACCTTAACAATATTAACATACAATTTCAGCTACACAGTACTGGTCCGCCTCCCACCAAAATCCTCCCTCACAGACAAATGTCTGCTTTTGTAGAAGAAACTAAACACATTTGATAAAGATTTCTTTAAAGCAGACTGCTATTTTCCCAATACACTGAACATTCAGACTGCAGTTGATggtaatttttgttgttgtttagagAATGCTGAGGGACTAATAAATGGGTACATCAGAGGAAGATTCTCCGAAGCATGTTATGAAAAGCACGTGCAAGCAGTCATGTGCACCACTTACAGATAGGAGTGTTCATACTTAAAAATAACCTACTCCACTGCATGAGTAtccttacaaaataagaaaagatgtgggacataaatagataaattatatatacataggtCTTAAAGTCTGGCAAGGCCTTATTGACTCAAGATTACCAATGTAATGTACCAAAATAGTTatgctgatgaaaacaaatgtgacaaAACCAAGACAAGAGTACTTGCacttcagattttaattttctgCCCCCAAACTGTCCGTACAGACACCGGGCACTAGATGCTGAAATAGATACCCAATGCTCAATTAATGAGTGTTGCATGATTATGTTTTTCCTGTGAACTTTTAAAGTTAACCCCCATAGCACCCAAGATAATGGCATAGTAatgatgtaaataaatataacattataaaaaataaaaagcctctGGTAAGTTTGAAAAGCTGTGACTGTGACATTGGACCCACCACTAAAGTAGAAAAACACTGCCACGTCAAATAAAATTTTATGAAAGCCACAGATACAGGTGAATTGCCAAAGGGTTCCATCTTTATTTTAAGtccagccaaaaaaaaaaaaaaacttgggtGTCCCAGGCTTAAGTGTATCAATACCCTAGAAACTCCAAGAGATGCTTTAAAGCACAGCTAAAAATAGATTCAGCTTTAATcactttgaaatggaaaataagaaatCACTCAAATGACCATGGAAAAAATATGGTAATtaagtttgcaaaaaaaaaaaatctggatcAACTTTCTCCAGTAGATCAATCCATGCCAAAcccaatatttttaaaatcacagcaatttgggattttatttgtgtgtatgtggaaATCAAGTCTGAATGCCTTCATTCTTCAGCTTGGCAATGAAACTGAATATTCCGGTTCACCAGTGGGAACCGGGCGAGATCAGCCCCGTTGGTACAGGGAGCTGACTTCGAGGCTTTGTGCTCATTTCTTCTTGGGAACGGCCTCGAGGGGTAGTCCAATTTCCCTCCCACGTAGCTTCATCCCAATGGCTCTCTCAATCTTGCCCAAAACCTGGTTGTTAGGGATTGCTTTCCCACATTCATAATCTGCAATGATCTGGGGCTTTTCGTTGATTTTAGTGGCCAGGTCTTTCTGTGTCATTCCCCTCTCCTGTCTGCCCTTCTGGATGACTTTGCCCACCTCCAGCGAGACTCTCTGGTGGTGCAGCTCCTCTGTCTCCCGATCCAGCTTGGCTGTGTTTTTGGTCACCaagtgctgtttgttttgtcctGCAGCCTGTTTAGATTTCGCCTGCGCCGCCGTCGGGCCCTTCTTCCTCAAGACAGTCACGGTATCCCAGTCACTTTCTGCCATGgctaaactgtgtgtgttttaagatcTTTACTACAGgctgatttttaaaatggaCGTGTTACAGAATAGCAGGCTTCCTCCCAGCTGCACCCACACTACTCCTCACAGCAGCACGCTTCTCCTGAGCTTTATTGAAACCGGGCTCGCTGACAGCGCTGGGGCGGAGAGCTGTGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75385 lncRNA upstream 4542 6156793 ~ 6160571 (+) True G60273
TU75382 lncRNA upstream 9914 6154947 ~ 6155199 (+) True G60270
TU75372 lncRNA upstream 50954 6113164 ~ 6114159 (+) False AMCG00020001
TU75369 lncRNA upstream 65212 6099476 ~ 6099901 (+) True G60257
TU75340 lncRNA upstream 174622 5990230 ~ 5990491 (+) True G60228
TU75388 lncRNA downstream 6065 6178545 ~ 6179635 (+) True G60276
TU75447 lncRNA downstream 187364 6359844 ~ 6382808 (+) True G60324
TU75499 lncRNA downstream 310354 6482834 ~ 6483995 (+) True G60354
TU75508 lncRNA downstream 397900 6570380 ~ 6572561 (+) True G60363
TU75591 lncRNA downstream 779973 6952453 ~ 6955093 (+) True G60431
AMCG00020004 mRNA upstream 37707 6126999 ~ 6127406 (+) True AMCG00020004
AMCG00020001 mRNA upstream 50917 6106994 ~ 6114196 (+) True AMCG00020001
AMCG00019999 mRNA upstream 133073 6023287 ~ 6032040 (+) True AMCG00019999
AMCG00019998 mRNA upstream 191641 5961221 ~ 5973472 (+) True AMCG00019998
AMCG00019991 mRNA upstream 818215 5342576 ~ 5346898 (+) True AMCG00019991
AMCG00020000 mRNA downstream 10219 6182699 ~ 6187889 (+) True AMCG00020000
AMCG00020009 mRNA downstream 29528 6202008 ~ 6212464 (+) True AMCG00020009
AMCG00020008 mRNA downstream 52469 6224949 ~ 6267200 (+) True AMCG00020008
AMCG00020010 mRNA downstream 108043 6280523 ~ 6291842 (+) True AMCG00020010
AMCG00020007 mRNA downstream 166050 6338530 ~ 6341784 (+) True AMCG00020007
TU75242 other upstream 803250 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 805748 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 1329316 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 2915051 3241439 ~ 3250062 (+) False AMCG00019934
TU74243 other upstream 5087050 1075504 ~ 1078063 (+) False AMCG00019884
TU75390 other downstream 10232 6182712 ~ 6186084 (+) False AMCG00020000
TU76237 other downstream 3611637 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 6347284 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 6363058 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 6443312 12615792 ~ 12619817 (+) True G61491

Expression Profile