RNA id: TU75447



Basic Information


Item Value
RNA id TU75447
length 921
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G60324
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6359844 ~ 6382808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TAGGAAACCGTGTTTTCGCCAGGGGTTTCAAAACGTCAAGTAGTAAATGACGGTGCGACACTGCATTGGATGCCTTGACTTGATTAGGTGTAGAAATTTGCATACGCTCGCCACCTGCCTGCATCTGTAGTGAGAGAATAAAAGTGCACAACGGCGCGCTTCCTACAAATCGCAATTTAAACGACGTGAGGGCGCGTTTGCAAACCGCTGGGAATATTGCCTTTCGTTCCCTGAATATTTGGAAgcagaacaaattaataaaacGAGTGACCTGTGACCAGGAGGCGACATGTCCGGCCCAGGAGCTGAGGACGATATTCCTCTGGGAGAGAGGAAGACCGTCACAGACTTCTGTTATTTGCTAGACAAATCCAAGCAGCTATTCAATGGGCTGAGGATTGAGAGAACCCTAATGCACAGATGACATCTCAGATTATCCTGGATTGCCCTGGAGATGACAAATACTCTGCTGTCTTGCTAAATTAGAAATTGGAATTTGAAGAtgaaatttgtaattttaaataaagaataaaatgagAAACTGCAAATGACAAATACTGTTCAATTCCTGTGATCTAGGGATCTGGTTCAAGAAAACAATTTCCGTAATCAAGCAAAGGGGATGATTTATCCAGTGCTGGGGTTATCGGCCATTGTGAAGATCGCTGGTGGGATACGTCCAGCAGACAACGGGAGTGTGGTCTCAGTGAGCTGTGCAGCTGTTCCTTTCATAACCCTCATAAGACTCTACTATAGTGCAGTGTTCTCCAAACTGTGGATCTCGAAGGCTTACTGAGGAGAtcttgaaacattaaaaacgaaccacagaaaactgtaaatcttatatatttaatatatgcttTGATCCGTGGAGCTAATACGATGGAGAGCTCTGAGAACTGAGCAGAGGCTTGCCGAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75388 lncRNA upstream 180209 6178545 ~ 6179635 (+) True G60276
TU75384 lncRNA upstream 187364 6165113 ~ 6172480 (+) True G60272
TU75385 lncRNA upstream 199273 6156793 ~ 6160571 (+) True G60273
TU75382 lncRNA upstream 204645 6154947 ~ 6155199 (+) True G60270
TU75372 lncRNA upstream 245685 6113164 ~ 6114159 (+) False AMCG00020001
TU75499 lncRNA downstream 100026 6482834 ~ 6483995 (+) True G60354
TU75508 lncRNA downstream 187572 6570380 ~ 6572561 (+) True G60363
TU75591 lncRNA downstream 569645 6952453 ~ 6955093 (+) True G60431
TU75760 lncRNA downstream 1406065 7788873 ~ 7792223 (+) True G60566
TU75830 lncRNA downstream 1498203 7881011 ~ 7884548 (+) False AMCG00020052
AMCG00020006 mRNA upstream 917 6348587 ~ 6358927 (+) True AMCG00020006
AMCG00020007 mRNA upstream 18060 6338530 ~ 6341784 (+) True AMCG00020007
AMCG00020010 mRNA upstream 68002 6280523 ~ 6291842 (+) True AMCG00020010
AMCG00020008 mRNA upstream 92644 6224949 ~ 6267200 (+) True AMCG00020008
AMCG00020009 mRNA upstream 147380 6202008 ~ 6212464 (+) True AMCG00020009
AMCG00020014 mRNA downstream 5598 6388406 ~ 6412281 (+) True AMCG00020014
AMCG00020015 mRNA downstream 32957 6415765 ~ 6443392 (+) True AMCG00020015
AMCG00020016 mRNA downstream 80784 6463592 ~ 6466574 (+) True AMCG00020016
AMCG00020020 mRNA downstream 391792 6774600 ~ 6792761 (+) True AMCG00020020
AMCG00020022 mRNA downstream 445753 6828561 ~ 6831695 (+) True AMCG00020022
TU75390 other upstream 173760 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 997981 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 1000479 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 1524047 4823813 ~ 4835797 (+) False AMCG00019967
TU74774 other upstream 3109782 3241439 ~ 3250062 (+) False AMCG00019934
TU76237 other downstream 3401309 9784117 ~ 9788052 (+) True AMCG00020105
TU76875 other downstream 6136956 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 6152730 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 6232984 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 6966869 13349677 ~ 13350712 (+) True G61675

Expression Profile