RNA id: TU76745


Basic Information

Item Value
RNA id TU76745
length 2706
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G61338
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12126842 ~ 12129571 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAATGAAACTTTATTGCTTCTTGATTTCAGAATCCCAGTTTACTGACATcagcaatacataaataaaagtgtcACCTCAAACCGTTACAGTAAAAAATATCATATTTACATCTGCAAACCAGGGAACAGAAGATGATGCatcgtttttattttctcctttgctccaagaaaacattttacaaaagtaaACATCAGGAAAACACGTGGAAATACTGCCTTGATGTTGGTTAGTCAATTGACAAACCTCTCATTGTAAAGTCAACCCTTATGAAGTGTCCCATTTCAACCCCCACAATCATTAACAGTGACAGCTTCAGCATCTATCTTCTTActcttgtgttattgttatgattgACTATTTTAGCATTCattgatttacttttattatttctatcCATCCCGCCATTCATTTTCCAGTACAGGGTCAGGGTACTTTTAATCTATACTTAATGCAATTTCAACGGATGGAAATTTCCATGCGTCCGAAACCTggaaactgtacttatttaatTCTAAGCAGATGGAGAGAGGCTGACAAGCAGTGACATCACTTCAAggagggaaagggaaaaaaaaaaaaaaaaacatgctgggATTAGTAAACCTGCTCCTCACAGAGCCGTACTGCAGGACATTCAGTCTCAGGGGTCGCCCGCAACAGACTGATGTGCGTCCAAGCGCTTCCATTGGTCACTATTCTCGCACTTTCTGTGGTCCTCAGTTCCATCCTTCCTTCCACCGCAAAATGCCTTTCAGATGTTCCCAGCTTCCCCAAGAATCCTTCTGCCCTTGAGAGAGATTCCCAGTTCTACATCATCATAATTTCCTACTCCCTCTCTCAATGTTCTGGATGCTGTGCACCCTGTGCTCGGACTGGGAAAAGCCCAGCCCAGGAAGCGCAGTGCTCTCCAGCGAGGGATCTCTAATCAATACATTAACAATAGCTGTAGCATTACAGTCACCCTGCGGAGACAACGCTCGGTTTATCGCCGGTGCGCTGAGCGCTGTGGTGTTTACTTGTTCCACAACATCAAGTCAAGAatcaaaaatacatcacagGGATTTCTGGTTGATGAATATTGATCAGAAATTCACATAATTGGATCTCATTTCGCAATCCATCCACCattaccttttatttattcattcattcattcaatctTTTTCCCCATACAGAGGCATCAGATTCTCTGTACAAAGCAGCTTATTATTAACAATGTTAAAtctgggaaaggaaaaaaattacaTCTATACCATTCCTATCATCTTTACTTGCATCAGAAGCTCTCCAGTGGAGACAGCCAcatgtttttacatatatatatatatatatatttaaatttcctattgttttctttaaaatcctTAATTCATTCTTTTTGTATGGTTGCATCATGCACAGAGCACTAAGAACCAGTTTGGTGCTTCAGCATAGGATACTAGAATGACTTCTGCAAAACACCAAAGCAAAGATTTATCCTTAAATTGTATTCCATAGTGCAGCAGATTGAGGCTTTTGGGACAGTACCCTCAACTTCTGGTATTACAAATCCAAAAGATGATTACCGattgaattgaaatgtatatagcGCCTTGCattaatgacaaaaaaaatgaaggttCAGACAATGGAAACTCAAAATCATCCTCAAATCTAGTCCGCAGTCTTGCAGGTTGTATAGGTCTCTTAATATCAAAGCCTGATTACATAATGGGGGGGTGATAGAAATCTAGAGATCAATTAACGAATTGAGAGGGCACGGACAATTAAAAGAACCCTGGGGTCGACAAGGTCTGGGTTTGAGAACTGTACAAAGCATTTCAGtacaaaccatttaaaaatgataatttttttttttttttttttttttttttgtagtctgATCcctgggggggaaaaaagcaaaacacttttGTATTCTATGCCGAGTACCTTAATGCCACGCAGTGGAGGAGACAGTGGGAGttctttattacacatttttccaGGTCTTACAGGGCTTTGAGGTTGGAAAATAGAAGTTAAGCTTGTCTACATCGATATACGACCTGGCCCTGGAGAAACATGATTACAGTCTAACTACTAAAACACCCTGTGTGCTCTCCACTGCATGCCCCTGGcaacaaaagataaaaaaacaaaccaaaaaaacacaagaatatccagcaaagtatattcatattcaaGCATCAGAGCCTACACtccaattaatatattttgtatataaaagaaaaacaaatgttttaggACAATGCAGAGAGTCAAGAGTTAAtgtgctgaaaaagtgaatgtcaCTGAGGACTTTAACCTTGGGTAAAAGTagtggaaaggaaaaaaaaacaataaccttGAAAACAAGACTTTACATCCAACACCTGGAGTGTGAGAATATGAAAGATCACATTTGAAGGGTTTGCGTTTGTCGGTTTGTTGCGTGTTTGTCCATGATGCCGGGGCCCAGAGCCGCGCTGCTCTGTCGAAGCAGTTTGAGTCCCACCCAGGAGCTCGGCCCGGTGTGGCCCAGCCCAGGCAGGTCAGATTGCACACTCTCCAGAACGTGACCCAACTTTGCATACCTCCCCCGCACCCCCCTGCCTCCCTCAGGCCATGCTCTCCCGCTCCCCCCTCATTTCCGAAGGCCCGTTGGATACTTTCTTCACCTTTTTCACTCCCTCCGTCATCCCGGTGGTCGTGGTGACCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76739 lncRNA upstream 110095 12016496 ~ 12016747 (+) True G61336
TU76738 lncRNA upstream 110691 12015698 ~ 12016151 (+) True G61335
TU76736 lncRNA upstream 114435 12011960 ~ 12012407 (+) True G61333
TU76735 lncRNA upstream 114966 12011661 ~ 12011876 (+) True G61332
TU76734 lncRNA upstream 117742 12008792 ~ 12009100 (+) True G61331
TU76855 lncRNA downstream 285108 12414679 ~ 12414892 (+) False AMCG00020171
TU76858 lncRNA downstream 285428 12414999 ~ 12468293 (+) True G61434
TU76862 lncRNA downstream 288239 12417810 ~ 12499428 (+) True G61435
TU76872 lncRNA downstream 354806 12484377 ~ 12495791 (+) False G61440
TU76859 lncRNA downstream 359950 12489521 ~ 12499428 (+) False G61435
AMCG00020156 mRNA upstream 131731 11992192 ~ 11995111 (+) True AMCG00020156
AMCG00020154 mRNA upstream 182442 11943279 ~ 11944400 (+) True AMCG00020154
AMCG00020152 mRNA upstream 203212 11880082 ~ 11923630 (+) True AMCG00020152
AMCG00020150 mRNA upstream 315000 11768917 ~ 11811842 (+) True AMCG00020150
AMCG00020149 mRNA upstream 411742 11713547 ~ 11715100 (+) True AMCG00020149
AMCG00020157 mRNA downstream 27970 12157541 ~ 12172006 (+) True AMCG00020157
AMCG00020163 mRNA downstream 56263 12185834 ~ 12198647 (+) True AMCG00020163
AMCG00020165 mRNA downstream 70557 12200128 ~ 12202687 (+) True AMCG00020165
AMCG00020166 mRNA downstream 239202 12368773 ~ 12371712 (+) True AMCG00020166
AMCG00020172 mRNA downstream 252242 12381813 ~ 12395040 (+) True AMCG00020172
TU76237 other upstream 2338790 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 5940758 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 6764979 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 6767477 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 7291045 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 390193 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 405967 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 486221 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 1220106 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1703599 13833170 ~ 13834832 (+) True G61894

Expression Profile