RNA id: TU76869


Basic Information

Item Value
RNA id TU76869
length 3853
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G61440
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12484377 ~ 12504599 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAACACAAAGTTGTCGGGTCTGAAGATCTGCCCAAAGGGTCCCGACCGCACAGAGTCCATGGTGCCAGGCTCCAGGTCCACAAGGATGGCACGGGGCACATACTTGCCACCTGGAAATGGATAGAGAATCAAAAATGAGTAAAGAATGATTTCCACTGAACAGTGCCTGCTCCTTCAGGGCTCAAACACAAGTATGGAATACCAACCTCCAAACTCCGCCTGGAGTAACCAGGgacacttaaaaacaatacattttctaagaAGGAAAATTGTTCTTTTCAAATGGAATGGCAAACTGCATCACTGCGGTCAATACCCTGCAACATTATTTGGAACATCAACTTTCACTATCTGAATCACATCTGTGTAAATCCTGCAACAGTTTCAGATGTTAATCACCATCATAACGTTTTTCTTATCCATAGAACACAACTAGGCCCCGCTGCCCCCAAAaacagatatcttgaaataggTTTCTTCATCGGTAATACATGCATGGTAGAGTAATATCCCTGGACTCGAATACCGGAGGCTTCATTGTAGTACACGTTGATCCTCTCCAGCTGCAGGTCGCTGTCTCCATGGTAGCTCCCAGTGGGGTCGATGCCGTGCTCGTCGCTGATCACCTCccagaactgagagagagagagcacgtTATTGAGAGAAAATAGCTCTTTAGATATACGGTAGAGACGCgcacaaaaaaagtgaaagtcTAATCTGCAAAATGTTGGACAATGATTGTCAGTTGGAAAGTACAATATACATGAAGGCATTCTCAGTTGCCATGGAAACCAGGGAACACCAGTACTGAACGCACATGACAGCGCAGCACAAGTGAACCAACAGGGAACCCCCGACCGCCTGTATGCAGGCCAGCCTCACCCAGCAGCAGAGGGACGAGGTGGCACAGGTGAAGCGAGCCGAGTCACCGTCAGGGAAAGACTAAGCAGGAGAACGACAGACCCAGTTAAAGGCCATGAAGCAGGACATGCAATAGGACATGCAGCTCAGGGACAAGACTCAACAAGGAGATCCAGAGCCCGAGAAGAGAAAACTATCCCAGACGTGACTGTCCTAATCAACAGCAATGGGAAGTAATTGAACCCCCAGTGACTGTTCCTAGACCAAAGAGTCTGGAGGAACACAGTTCAGCCTGCAGCTGCACTACCCACACAGCCTGCATTGTGATCTACACAGGTACTAGTGACCCAGGCACCCTGCTACAGCAGCACACTGCCGGAGTGGTGAGGACGGCAGAGCCATGTATCAAATTAGCCAACTACCACATGGTTAATGCTGCACCAAGCATGGTGCATTTGAATAAAAGAGGGATTAAGGCATTGCCAAGACTAAAGGATGCTGCCCTGGGCCACAGCCCAATCAGGCCCCCCACCCACACTGCCAGCAAagtccagcacagcacagcctcAAGCAAAGATCCCTTCCCCCTCCTGCAAGATTTAATTCATGGcgatttgaaattgaaattttatttatacattttaaaaaaagaagagaaattGAGCACCaaatttgagggatccatgctagaaaaacagttttgaatgcTAACCCAATTACCGGTATCCAATGCAAAAAGACAAATCTGCTGTGAATTTGACTGCATGACCCAGCCCATTGTGCTGTACAAGAGTTAAATGTGTAGACTGAGTGGACCTCCTACAAGACTGCACTAAAATGGGAAAAACACCCAGTAGAAACCCTGCATTCAGTATTCTGTAAAATCATATTACAAGTACAAAGAAACTTCAACAATGGTTGCAGGGCAGCATTAGGTCTAGAATATGCATCGTCATAGAAACAGGCtgacacaggcagacctggctgCCCCGAGTGGACCAgcactgtggtcactgagccagGATAGGTCTCTCTTCTGCCAAGCAATACATACACCCACATTAGGgacatttccattttcacacacaaaacaaattcaagtcAGTCAATGAGCTGACGTCACAGGCATTGTTTCGATTAGATGCgtttcacaaaccctgcagtaATCGATTTCATTCAGTAACAGATCTTACGAAAAAACTGCCAATCATATTGGTTACAGCTTTATTAttcatcatagatttacattgaTCAATGCAAATTTAATAAACCATTGACAACGCGTCAGTCTAGAATTATGCATAAGGCGTTGGCTATGCGGTTCACGGCTTCATTGTGCAAGACGTTGGCTTTTGCCACCGCCAACAACGGGCAGCAGTATTTTtagtgacatttttttatttgatcatgTCCCTCTTGATCTCCACATCGTCTCTTGGTTCCGCAGTACCCGTTCACAGCTGCGCTGGGCTGCGGCGATTTTGCCGATTTCTGCGGGTGGGGCTCAGTGACGTCACGCAGCAGCACTCGAATCTCTGCTCAAAACTGCGCTTCTCGAACGCGACCACAGCCGCCGCAGCTGGAGGCGCACAATGTGCAACTGCACACCAGCACATGCCGTCTCAACACACTACAATacgcattttattttttaaacacacacactataagtTAAGTGTCCCAGACAGTAGGGCGTCCACACCAAGAATATATAAAATTTGGTACACCAAAGATACCAGGGCGATATCATAAATGCGACGAAAAATGAAGTGTGGAGTGATGGACAATCAATACGTCCATTCGCGAACCAGGAAAAGGAGGAGCCATCACGACTGGAACTTTCTAAAATGGCGGACaatcctccccccccccctcaacaCACAAAAGCTCAAAGGCCAGTACATcaagatggaaaaaatatatatatatacacattgcaGACATCCTGATGAAttgtcttgtattttattaaacaccGAATTAACATGTAATTAGGTCAGGTAGTAGCccatcacatttttattgtttctcaTGCAATGTTTTATTGCTTTGGAAACACTGCGAATCTGTTACTTATGCCAAATAAAGCACCTTAAATAGAAACTGCGGTGCCACTGCGTCACAGGCAAAGCCCAGGCTCGGACACTTCCATCCTCCACCGCTATAAACCCCACAGTGAAGGGAGGAACATGACTGGTCTGGAGACAACAGCGCCGATCTGTGCGGGGCGAGGCTCGCCGCTATTATGACGATGCAAAggtttatacattaaaaaaaagatacaagcCCACATCACTCATGTCTAGTAATCAGTTTGGTTATACAAGGATTTGACAAACGTAAACATGATTAAACACACATCTCGAAGATTGTACGTTTCAGAAAGCTTAAGGATCTTCAGGAGACAATAGACCCAGGGTGGGTTATCGACGAAGCTCATCTATGCACCATGAAAAATGACgcacttaattacatttgaaagggATGGGCCGGCGGGCGGCATTAAGATCTACTCTACACAGATCTGGTGCCACGTTGAAATTGCCATCTTAGTATCGTCGATGGGGTGGggaaataaatcatatttggTCCCTTAGATTAACATCGGACCCGACCAGCCTGACTACAGCTGAAGCGTCTGCCAAGGTGTCGCCAGAGGCCGGCACTGgactttgctttttgtttgttcctttcTGCCATATTGCTGCGTGCAGCCAATTTCCGCATTGCACCGCGCAGGGAACACCCCTCCATCACACCGCGCTTCCATCGAGGCTATTCAATGGCTCTCATACAGACCTTGGCGCCGATTTGATTTCCGCACTGGCCGGCTTGCAGATGGACAATCTCCCTCATGTTGAAGCGGTGTTGAAAATTCTCGGGTGacgcagtaaaaaaaaatcagagacagaaaaacacacgTTGTCTCAGCAGCTGCAGTCTGTGTTTTATGCGCCAAtcttaacaaaaaaatcccCAGGACCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76858 lncRNA upstream 22704 12414999 ~ 12468293 (+) True G61434
TU76855 lncRNA upstream 76105 12414679 ~ 12414892 (+) False AMCG00020171
TU76741 lncRNA upstream 361426 12126842 ~ 12129571 (+) False G61338
TU76745 lncRNA upstream 361426 12126842 ~ 12129571 (+) True G61338
TU76739 lncRNA upstream 474250 12016496 ~ 12016747 (+) True G61336
TU76896 lncRNA downstream 77662 12582261 ~ 12585656 (+) True G61460
TU77051 lncRNA downstream 325373 12829972 ~ 12852064 (+) True G61568
TU77088 lncRNA downstream 493251 12997850 ~ 12998227 (+) True G61588
TU77173 lncRNA downstream 832397 13336996 ~ 13338088 (+) True G61650
TU77193 lncRNA downstream 836354 13340953 ~ 13341315 (+) True G61668
AMCG00020169 mRNA upstream 9092 12479904 ~ 12481905 (+) True AMCG00020169
AMCG00020173 mRNA upstream 38212 12448768 ~ 12452785 (+) True AMCG00020173
AMCG00020170 mRNA upstream 59845 12428416 ~ 12431152 (+) True AMCG00020170
AMCG00020171 mRNA upstream 76046 12408962 ~ 12414951 (+) True AMCG00020171
AMCG00020172 mRNA upstream 95957 12381813 ~ 12395040 (+) True AMCG00020172
AMCG00020177 mRNA downstream 31167 12535766 ~ 12542261 (+) False AMCG00020177
AMCG00020176 mRNA downstream 58561 12563160 ~ 12564443 (+) True AMCG00020176
AMCG00020182 mRNA downstream 146560 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020181 mRNA downstream 147617 12652216 ~ 12654743 (+) True AMCG00020181
AMCG00020187 mRNA downstream 160309 12664908 ~ 12690345 (+) True AMCG00020187
TU76237 other upstream 2702945 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6304913 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 7129134 5355772 ~ 5361863 (+) True G60137
TU75235 other upstream 7131632 5358464 ~ 5359365 (+) True G60132
TU75012 other upstream 7655200 4823813 ~ 4835797 (+) False AMCG00019967
TU76875 other downstream 15165 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other downstream 30939 12535538 ~ 12537752 (+) False AMCG00020177
TU76948 other downstream 111193 12615792 ~ 12619817 (+) True G61491
TU77200 other downstream 845078 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1328571 13833170 ~ 13834832 (+) True G61894

Expression Profile