RNA id: TU76948


Basic Information

Item Value
RNA id TU76948
length 2946
RNA type TUCP
GC content 0.50
exon number 3
gene id G61491
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12615792 ~ 12619817 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTGCATACCAGCACGCACCCTGCCAAACAGCACAAAACAGACAACAGAAATAGACACAAACATCGTAGCATTGCAGGTGCCAGTTCTGTGTGCTAAAGAGCAGTACCATTCATTCGACTAACAGTCTCTCCAGCCCTAGAGGGCCTCAGTCTGGCAGTGTTCTGCTCCTGCTCACCTGCATGTGAGCTAGGACAACAGTTCACAATGGGTCAGTTGATTCATCAGTTTAATTGACATTGTACGAGCTGATTAGGGGGAATGTGCACCAGGTCTCTCTATCTGGGCTCAGATCTGAAGACCTCTTCATCTGTGGCAAGATCAAACGGATATGTGGGTAGGATTCCATACATTTGTCATTGCAGCccatcagtcagtgtgtcagtcatcCCTGGACTGCACAGTGCAGAGGGCCCGCCCCTAACTCACAGTGACTCAGTGTGCTTGTGTGcaagagtgtgtgtttgtgtgtttttctgtgtgtgtgagtgtctctttgtgtgtgtttgtgattctctgtgtctgtgtctgtgtgtatatgtgtttctGTGAGTGAGACTCAGGCTGCCTTAGGACTCCTTGTCCATTCCAGTGCAAGTCTTAATTAGCAGGGTGATTTTCAGTAGCAAACCCAATTAAACAATTGACGTTCAAAGGATTGAAAAGGCCTTAGCTGACCTGCATGGAAGTTTGATGACGTCATGGTTTTCTCTGCAGCTTGGTAAACTGACAAAGAATGGTTCTTGGAGTGGAATTTTACTTGCACTCTGGGCAGGAAGTGTGGGAATAACAGTGTCAAATAACACTGAGTCTTGTGAAAAAGGTgtacagaagagagagagagagagagagagagtaaaaatAGACCCAGGAAGGCTAACAaaagaaaccttttttaaatatttatcaagaTGTAGTTTGTGTCCAAGCCACAGCCTTCGCAGACAGTTAGATGCTCACAAGCTGGTTATCAAGTTGCATGTAAAACGATAGCCTCAAAAGATACAACAGATGTAGCGTGTGAAACCCTAGTTGTCAGTGAGAGTATAAATTAATTCCTCTCGTGTTCAGTCCTAGGCTGTAACACTAGGCTATAGCAACTGTAATTCATCCTTGTGGTAGTTGAGAACAGAGGGATTATTCAAGAGTATTGATCACCCTGTAAAtgtgtgtgtttttgtgtatttgtgagtgagtgagtgtgtgtgtgtgtgtgcgcgtgaTATGATACAATGTTAAGAGTTTGATTTTCCttgaaagtggaaaaaaaaaaagaataaattaattaatgctaaAGAATGTAACcggatttgaaaataaagaatcaTTCTAGAATCTAGAAagttatttacaatatttttgccGAACTTTTCCAGCAGCTCAAAtgtgagatttttattttttcgaaTCCACGTCCTCCTTGTCTCTCCCAGCTTGAACAGAGATACATCACCGTTTCTCTCCACTGACAATGTCTCATCCCCTCCAACCCCCAGCGAGTCTGCTCTTCAGTCaaaaaatttattaaaaacaaaaatcccacTCTGCAGATCCACACCAAGTGCCCGTTGAGAGGTCCACATAAGCAACCTTCTCCATCCGTGTTCAAATACGGCCAAGCATAAGAGGGAGTGGAGTGGGTGGCATTTCCAGGCGAGAGCTTGTTCCAACAACAACCCCTGTCCTCTTGAACACTTTCCTGGTTGTCTTCTCAAGTCAGACTGCGATATCATAGCAGATTGACCTTTCCCACCACCTGCTTGCAGCCGTTCCTGGAGTACTCCCGGTTACCTGCCGTGTAGTAAGAAATCTCAGCGGCCAGGCGCTCAATGTGGGAGGTGTCCGGGTAGAAGCCCTCCCGCGTCATCTCGTCCAGGAAGCACTCCATGACATGGCTCTTTTCCAGCAGCCACATGGGGACCACATCCGTGTCTGCCCACAGAGGGTGGTAGTGGACCAGGGAGCGCTTCACCTGCCTGCCCAGCTCCTGGGTCAGCTTCTGTTTGCCCAGAGAGTCGTTGCTGGAGGAGTTCTGCAGGACAAATTTGGTGATCTCCGCCTGGCCGATGTTGCTGATGAGCACGTAGACAGCATTGAGGTACTCGTTGGTCTGGTTGGCACGGAAGAAGCCCTGCAGGTACTCCAGCAGCGGGCTGTGCATGAACTCCACCTCATCAAAGATGAACACCGGGATCTTCTCCTCTGCCTCAGCCCGGTTTACCATGTCTGAGATGCGGGTGGCCAGCTCCTGGGCGCAGTGCGGGGCATTCTCCTCCAGGGGGCAGTGATGGAGCATGAAGTACTGCAGCACCAGCTCCTCACTAGCCACCGAGCGGAAGTGGCGTGCCAGGATGCGGCCCAGATGGCTCTTACCCACACCACTCGGGCCGTTGATGGAAATAACGAGTGGCTTGTTGTGGACATAGGTGGAGAGGTAATCTGACAGCAACTCCAGGATGCTCTCTGCTGCCTCCCTCTGGCCGAACACCTCACGCTTTAGTGTCTTCTCCAACCCCTCCAGGTCGTACCTTTGCAGGTGATCATCCAGGTTCTCGATGGCGTTGTACACCTGCACGCACACAATGATGCTGAGTAGGAACAGGCAGTTCTTTGCACGGCTACGTTCCTTGGCGGGCAGGTACCGCCGACCATCATTGGGGAACATGACTCggttcctcttcttcttctttctcttgCGTGGGCTGCCACCACTAACGGGCAGCTGGTCAAAGGTGAAGATCTCTGGACCCGTGGGCCGTGGCAGCAGTCCAGACCGGGGCAGCTCCCCACCCAGCTCCGCCCTTCGTTTCTTCATCACCTGGTACTTGCGCCGGATGCGGACCATAGCGCGCAGCTTGGAGGAGAAGTTGGAGATGCTGGGAGCAGCCGTCTCCGTCTGGCTCTCCTCCTCCATCGCACTCTCTGATGTGTCCAAGTCAGCCATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76896 lncRNA upstream 30136 12582261 ~ 12585656 (+) True G61460
TU76861 lncRNA upstream 109193 12499143 ~ 12506599 (+) False G61435
TU76869 lncRNA upstream 111193 12490997 ~ 12504599 (+) True G61440
TU76870 lncRNA upstream 111193 12490997 ~ 12504599 (+) False G61440
TU76859 lncRNA upstream 116364 12489521 ~ 12499428 (+) False G61435
TU77051 lncRNA downstream 210155 12829972 ~ 12852064 (+) True G61568
TU77088 lncRNA downstream 378033 12997850 ~ 12998227 (+) True G61588
TU77173 lncRNA downstream 717179 13336996 ~ 13338088 (+) True G61650
TU77193 lncRNA downstream 721136 13340953 ~ 13341315 (+) True G61668
TU77194 lncRNA downstream 721662 13341479 ~ 13341699 (+) True G61669
AMCG00020176 mRNA upstream 51349 12563160 ~ 12564443 (+) True AMCG00020176
AMCG00020177 mRNA upstream 73531 12535766 ~ 12542261 (+) False AMCG00020177
AMCG00020169 mRNA upstream 133887 12479904 ~ 12481905 (+) True AMCG00020169
AMCG00020173 mRNA upstream 163007 12448768 ~ 12452785 (+) True AMCG00020173
AMCG00020170 mRNA upstream 184640 12428416 ~ 12431152 (+) True AMCG00020170
AMCG00020182 mRNA downstream 31342 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020181 mRNA downstream 32399 12652216 ~ 12654743 (+) True AMCG00020181
AMCG00020187 mRNA downstream 45091 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020191 mRNA downstream 115058 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020192 mRNA downstream 182241 12802058 ~ 12815332 (+) True AMCG00020192
TU76875 other upstream 78040 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 78040 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 2827740 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6429708 6182712 ~ 6186084 (+) False AMCG00020000
TU75242 other upstream 7253929 5355772 ~ 5361863 (+) True G60137
TU77200 other downstream 729860 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 1213353 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 1243660 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 1328609 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1847983 14467800 ~ 14469300 (+) True AMCG00020281

Expression Profile