RNA id: TU77051


Basic Information

Item Value
RNA id TU77051
length 2220
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G61568
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12829972 ~ 12852064 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttcattgtttatttcacaataCAGATACAATGCCATAAACACAAActcattttatgattttttaatatatttaatattatataacaaATGACCAGCATATCATTCATTTACTTAATCACGTTTAAGACAAAATTACAAccatgtaaatgcaaaattatacaaaaactgattgaagggagaaaaaaaaagttgtgacaTATAGCACCAGTTATTTGTCTCAGCCAGCTAAGGTAAAACTAATTCAATGTTTCCATCTTGCACTGACCTTGTCTGGCAAAAATACTTGAGTAAGATAATACAGATCTGTTCCCTTTGTAACTTGCATCAGAGCAACTGGTATTGCAATCCATTCTGTCGAAGGGTGATTCATAAAGACCAAGGCCTGCCGTAACAGGGTGCATTATTTTGGTATGTGCAAGATTGAAcatgtgtacatatatgtgATGCATGTAATTTACAGCAACCCTGTACCTTTATTTTTCATGCCCTGTGTTCACTAAAGGGGAATCTGCATATCCACTGTTAAAGCTCCTCTATGCCACTAAAATGCATTGAAACTTGCATGGGCTTCCATTTTTTCAGTGattaaaagtcaaattaattcAATGACTGGGATCCAGTTCCAGGCTGTGAAAGAATCGTTTCATATTGTCGTCCCCCAGTCCTCGTCAGATCAGGTAACAGATGCCTATTTCCTTGCATTGACAGAGCTAAACACAGTGAAACactattcaaaacaaaacagaaacaggtCATACTCACCGATTTCAATATTGTTATCAGCAGGTGTGACCAGCTGGTAAGGTGTGAACCACAGCTCtactgtaaatatgtaatacagTAAGTTTGTAATACTAGGCCACCTTTGATTAAAGCATCAGCCAGATGAGGAGAATGAcaacaattaagaaaacaaaaaggccaCTTTTTGCTAATACTGCACTTGTTGAGGAACTTctgtgaaaattgtatttacattcttagtgattttttaatttcatttccaCACAAGGTTGTTCAAAACCAGGACTGTTCTGCATTATGAGTCTAATGTGTTCTCTGTGACATGTGTGGCTTCTTGGGCATGTCTCTtcactgtgtaaactggaatgAGGCAGGCAGGTGTGTGGCAgggctgctgtttttttccatgCCAGCTGTAGATACAAGCAAAGCAGCAGACCTTGTGTTTCCTTCCCGTGATTGTATTTGACCTTAAACCCAGaagcaataaaatatgaatattctgTGAGAACATGTATGTCTTAGATCTTGTGTGGAAAATGCTACAATCAGATGATCGCTGAGAATACGCTGCTATCTCTTAGGAGATTCTAGGCAAGGTTGTTCACTCATTCTAACTCACCCtgttttaaatactatttatttgttgaGGCAGGAATGTCTACGAAGTATTTTAATGATTGCATTCTGATGCATCTTTCACATGTGTCAGACTAACAACCGTCAGAGTAAGAGTTCAGGTAAATGCATGaatattctgtattttgaaGGCATTTTGGATATTTTCcaacattgaaaaaaaacttgaaagaacATGGCTGAAAGGACTCCCAACTGGGTCTTGAATAGTACTCAAGAGTTTTGCAGCCATACTTGCAGAGTACCCTTTTAAAAGCATTAGCTGTGCCTCTGATAAGAACACATTGTTAAAGCTACACAACATCTTCAAAACTGGTTTAAGAAATATTCCTGAAGTCAGTTTGAGGAGACAGCGCTACTGGAATAATGTACAGCATGTATAGCACTGCTGTAAACCTGGATTAATAActttaaatcaaaaacaaacaaacactgtaaaTAGAAGTTTACAAATTCTATAAATTAGCaccttttttaatatagaagtctctgtaaacaaaaatattaatattgtccTTCTGAAGGATCTGTTCCCGGAGATCGCAGTCTCTTGCAGTCTCATAAATAGAGTTTTTAACAGCCAGTCTGACCGCGAGCTCGGCAGCAAAATGTCGGGAAGGAAAtcgaaaaaaatatgtaatgtattgttttcctgcTGGAAGTTCCTTCTCCCCACCCCCATCTCCATGAAGCAGTAGCAAATCAGAAGCAGACAAAagcaaaagatgaaaaaaaaggaaattccCTTTGTCCTTTTCtccagtgtctctgtgtgtgcgtcagtgtgtaTAAACATTAGagggtgtgttgtgtgtgtgtgtgtgtGGTTGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76896 lncRNA upstream 244316 12582261 ~ 12585656 (+) True G61460
TU76861 lncRNA upstream 323373 12499143 ~ 12506599 (+) False G61435
TU76869 lncRNA upstream 325373 12490997 ~ 12504599 (+) True G61440
TU76870 lncRNA upstream 325373 12490997 ~ 12504599 (+) False G61440
TU76859 lncRNA upstream 330544 12489521 ~ 12499428 (+) False G61435
TU77088 lncRNA downstream 145786 12997850 ~ 12998227 (+) True G61588
TU77173 lncRNA downstream 484932 13336996 ~ 13338088 (+) True G61650
TU77193 lncRNA downstream 488889 13340953 ~ 13341315 (+) True G61668
TU77194 lncRNA downstream 489415 13341479 ~ 13341699 (+) True G61669
TU77195 lncRNA downstream 490616 13342680 ~ 13343013 (+) True G61670
AMCG00020192 mRNA upstream 14640 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020191 mRNA upstream 94759 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020187 mRNA upstream 139627 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020181 mRNA upstream 175229 12652216 ~ 12654743 (+) True AMCG00020181
AMCG00020182 mRNA upstream 178208 12651159 ~ 12651764 (+) True AMCG00020182
AMCG00020206 mRNA downstream 396693 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020213 mRNA downstream 451346 13303410 ~ 13330177 (+) True AMCG00020213
AMCG00020218 mRNA downstream 584678 13436742 ~ 13451791 (+) True AMCG00020218
AMCG00020217 mRNA downstream 604615 13456679 ~ 13461481 (+) True AMCG00020217
AMCG00020225 mRNA downstream 661490 13513554 ~ 13516767 (+) True AMCG00020225
TU76948 other upstream 210155 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 292220 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 292220 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3041920 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 6643888 6182712 ~ 6186084 (+) False AMCG00020000
TU77200 other downstream 497613 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 981106 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 1011413 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 1096362 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1615736 14467800 ~ 14469300 (+) True AMCG00020281

Expression Profile