RNA id: TU77173



Basic Information


Item Value
RNA id TU77173
length 1093
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G61650
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13336996 ~ 13338088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTTTAGTACAAAAATTTTATTGTGTACAAAATATGATCTCTTGCCTCATTCTTTACACGATTAAAAAAAGTAGAAACGCTACAGGGACACACACTTAAGACTCCCATAAAAATATGTGAACAACAAGGAACTACAATTagaaaaatactgttaaaaaacacaaaaagctatTAAAAAAAGAGTTCAGTGCTGTTGCTTGTTATTGCTTTCATtagcagaaaaatatattgtaaatggtCACTGGTCACAcagatgtaaaaaacaaaaaacaaaaaacttttgttaattaaatcttCACATTACATCTGTGCAGCAGCAGTTCACCAGGGAAGGGTGTCCATGGGCACAATGCAGGAAAGACTAAAGTGCACAGAGTCTCTGGAATGGCTATTGAACAGCTCGGTCAGGCTGACTGCAAACACACCAGCCTAATGCAAAGAACTTCCCAATTATaccttcacacacaaaaaactaccTCCAGCCCAAAGGCAAGTGGCCTTGtgtagagaaaacaaacaatgttaCTAACAACACAAccgaaaacaaataaattattaagacAATGGAGAGAAAGGATCCACAGAGTTTACGCAGAAGAGCTGCAGGGAAATCCGTCCAGAGCTCGATTATGATTGGCTACGAGTTAAATTTAGCCAatgggaaggggaggggggtgggacAGGGGTTCTGAAGAATTTCCACTGTACGTCCATTACaaaaattcagaaaacaaaagaaacaaacatatttgtCAACAGGCATCAGGAGCAGCAAACTGGCCAAGCTCAGACTgtagattacatttattattagtagtagtattattattaagcagacaattaaataaaacacgcttgaaaacatgaaaaggtgTGCATTTAAACACCTGCCTGGTCTTTACGGGGGCCAGAGCCTAGAGAACGAACCCGTAATGACTGAGGTAGAGAGAATGGAGGGAGGGGCTGCACCTGGCTGGACCCCACCCCTACACCTGCTGGGGAGTCAACCCTGGTCTGAGCCAGCGAGGGGAGCGGAAGGCTCTGCTTTCTCAGGCCTGGGGAAAGGCCATCCATTTGATTTTTTTGAATCCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77088 lncRNA upstream 338769 12997850 ~ 12998227 (+) True G61588
TU77051 lncRNA upstream 484932 12829972 ~ 12852064 (+) True G61568
TU76896 lncRNA upstream 751340 12582261 ~ 12585656 (+) True G61460
TU76861 lncRNA upstream 830397 12499143 ~ 12506599 (+) False G61435
TU76870 lncRNA upstream 832397 12490997 ~ 12504599 (+) False G61440
TU77193 lncRNA downstream 2865 13340953 ~ 13341315 (+) True G61668
TU77194 lncRNA downstream 3391 13341479 ~ 13341699 (+) True G61669
TU77195 lncRNA downstream 4592 13342680 ~ 13343013 (+) True G61670
TU77196 lncRNA downstream 5055 13343143 ~ 13343381 (+) True G61671
TU77197 lncRNA downstream 5669 13343757 ~ 13344039 (+) True G61672
AMCG00020213 mRNA upstream 6819 13303410 ~ 13330177 (+) True AMCG00020213
AMCG00020206 mRNA upstream 81705 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020192 mRNA upstream 521664 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020191 mRNA upstream 601783 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020187 mRNA upstream 646651 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020218 mRNA downstream 98654 13436742 ~ 13451791 (+) True AMCG00020218
AMCG00020217 mRNA downstream 118591 13456679 ~ 13461481 (+) True AMCG00020217
AMCG00020225 mRNA downstream 175466 13513554 ~ 13516767 (+) True AMCG00020225
AMCG00020223 mRNA downstream 207323 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020222 mRNA downstream 245193 13583281 ~ 13585950 (+) True AMCG00020222
TU76948 other upstream 717179 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 799244 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 799244 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3548944 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 7150912 6182712 ~ 6186084 (+) False AMCG00020000
TU77200 other downstream 11589 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 495082 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 525389 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 610338 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1129712 14467800 ~ 14469300 (+) True AMCG00020281

Expression Profile