RNA id: TU77495


Basic Information

Item Value
RNA id TU77495
length 2146
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G61895
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13888151 ~ 13890428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCATTTGAAATGAGAAATTCTCTCAATCTTATCACTCCTCCCTACATAGATATACCCTTACAGTTACCCTACAGTTAATAGAATACATCACATTACTGCAAACTTTCCATTCCCACCCACACAATACAAAGACTGCGAGCGATCTTCAAAAAACAGACATAATGGATAAGAGTTtacctgtgttttgacattactTGAGACTAGTTCAGTGTATGGACTCCCAGAACATTATCTGCACAGCAACTAAGAAAGTCCCAATGTGTCACACTGACAACATATTTATAagctaacacacacactaaaacatGTGAACAGAACTGTACACAAAAAACCAGAGACAAAGACACGCACAACCTCTGGGCCACTCCTTTATCACATTTGCTCCAACAAGCACGTATTTGTATAGCAGTGGTGAACTTCAGCTCTGTGGAGATAAGGGTGTCAGTGTGACCTGTTGGCGGTGTTAATGTTTATAGTTTATGGCATCACCTAAATAGGTCTCTCTAGCCTCCCCTCTGCCAGGGCATCTCTCTCTATCGCTGCCACACACCCAGCTCCATTTCCGAGAGACAGACAAGGCAAGAGAGTGAAATGGCATCGGGAGGACAGTCAGATGGAGAGACTCAGACAGGATGTAGAAGCAGAAAGAGGTGAACAAGCAGGCAGTTAGACTGAGACACAAAGAAAGACCGtcaaaagagagacagaaacagaccCACCTCCTGGACTGTTGATGATGAGCCCAGAGAACAGGAGCGCCACGTTCTTGTAGTCCATGTTGAAAGTCATTTGCATTGACATCTCATGGCCCCCATGTCCCCCCCCCATGTCGCCAGAGGTGTGGTCGCCGTGGGAACTGCTGGTTGGTTGCATCACGGTGTTGTGGACATGATTGTGGTTGTGGTCATGGTCagacatatttatatttccGTGGAACTGGGGAGAAAGGGAGTAAGTCActgagacagagggacagaaaCCTGGGATGATGCACATATTGGGGAAGGGGTGTTACTGCAGCTCCACAGCTCTGGTTGCATCTGTTGACCATCTTGCTAAACAATTGATTTATCAATTCTTGTATTAAATTAAGGTCACATGTCCTCCCTGACCAGGCCCCTGAGCAACAGCCTCGTTAAGAGCCCAGTTAAGGACAGACTAATCAGGCACTCCGAGCCAGGTGTCTGGACCACAGTTGCCTGCGGGTGAGCTGCCCGACAGCCTGTCCCTCTGTAATCACATCTCAGCCCCTGTAACTCAATCAGCCCCCTAGAGACCAGGCTGAGCCATCCACACTCACTCAAGTGTAATGAGTTTAAACGGATCAGAGTGATCAGAAACATCTTCTCTGAAAGGGACACCTGCAGGGCTGCAAAATGTTAGTTTAGCCcgtgttgaaaataaatattgctaaaAAAGCCTACATTTGTTCCATCTACAATGTTTCTATTATTATGCCATGTTGTTCCTTTttctgaaatcattttaaatccatGTAGAAAGTTTGTCATAATTGTCCATACATTTCTAGCTTGTGtttataaagttttaaaatcaaaaaatcAGAACATTAAAAGATAAAACTGATTTCATAGGGCTCTATAACAATCCCAGTGCACACTGTGATAAAACTGTCTGAGCTCGCACTCATTCATACAAGCACACAAATGGGCAGAAAGTGTCCCACTGTCTTGTTCGTCTGACACACAGATTTACAACACACGTGATGtgaacacacatgcacatgcacacgtACACGCAATCTCTGGGCCTCTCCTTTAATCAAAAACAGATTTGCTCCAGCAAGCACATATTTTTATGGCAGTGGTAAAATGCAACTCTGTGGAGATACGTCTGTCAGTGTGACCTCTCTGTTGGCTGTATTAATAGTTATAGATTATGGTGTCACTGAATCAGTCTCTGCCACGACACTTTACTGTAGAACACCCAGCTCCGATTCCCAGACCTGGGGGAATCACAGTTTGCACAATCACGGCAGGTActcattaaatcattatttttttccctttactgTGCGGGTCCCTATTGAGGGGCTGCCTGATTGTCCTGCAAGGCCCCTGAGGACAGCGCTGCCCCTCCACATGTTAAAGGAATGACAGTAGCACACCCCCAACAGCTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77507 lncRNA upstream 3035 13882825 ~ 13885116 (+) True AMCG00020241
TU77473 lncRNA upstream 95207 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 136788 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 178655 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 291425 13595514 ~ 13596726 (+) True G61774
TU77649 lncRNA downstream 244870 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 245992 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 246998 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 305356 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 351437 14241865 ~ 14288834 (+) True G62039
AMCG00020241 mRNA upstream 3546 13884088 ~ 13884605 (+) False AMCG00020241
AMCG00020246 mRNA upstream 10925 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020244 mRNA upstream 13852 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020255 mRNA upstream 15506 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020243 mRNA upstream 41166 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020259 mRNA downstream 8616 13899044 ~ 13911515 (+) True AMCG00020259
AMCG00020260 mRNA downstream 29163 13919591 ~ 13944753 (+) True AMCG00020260
AMCG00020267 mRNA downstream 59214 13949642 ~ 13949983 (+) False AMCG00020267
AMCG00020265 mRNA downstream 64059 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020262 mRNA downstream 82986 13973414 ~ 13975559 (+) True AMCG00020262
TU77503 other upstream 21588 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 53319 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 537439 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1268334 12615792 ~ 12619817 (+) True G61491
TU76877 other upstream 1350399 12535538 ~ 12537752 (+) False AMCG00020177
TU77582 other downstream 57998 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 577372 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2923946 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3568732 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 4037900 17928328 ~ 17928904 (+) True G62895

Expression Profile