RNA id: TU77649



Basic Information


Item Value
RNA id TU77649
length 990
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G62012
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14135298 ~ 14136287 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TAAAGATGTATGGTACATTAGGCCCCATTCCATGTTGCACTGTTTCAATTATGCATTACTGTAAGAGCCCAGTTCATTTACTGAAAACAGTTCAgagacagatataattgtgaaGCGGTTTAACTCATTGTtctaagaaaaacaacagttaTACAAAATGGAGGAAATTAGAAAAAGCTGCACAAAGTTAAAAGCTGCAATTATCTTTCTGGGATTGGAGAAGCAATTACTTAGAAAAGCATGACTATacttaattgcaaaataaaattaagacattaatccccccccccaagttATATCCAAAGTTATATCTGGATAACTTTTCCATTATGCCATCTGATATAAATCTGTAATCTGAAAAGGCCTAGCCACTAGACAGCAGATAATGTGGTTGGAAAAGTGTTGAGAATCAATATCAGACACAAACTAATGCAGCACATGGGATGTCACTGCCCTAATGGCTGTGCTCAGCCTGATTGTGCTTGTTGGCTGGGTCTAATActccttttccactggcatatcaGAACTGACTTGGAACCACAATGGTGTGGTGCAGCATGTTACCCAATGACGATTTTGTAGAGCCGACACTGCTGAAACAGGACATGGATTTTGGGCTCTGCTCCTTACCTAGTGCTGGCCCGGAGCCGACCTATTACtaggttaaaatacatttcaaatacttaatacattaataaaatacattacaaatacttaacaAACCGCTACTGCTTAATAAATactggtaaaaacaaaaaaaaagtaggatttATCTACACAATTAATGTAGCCCTTCTTCATCTGTAACCTTTAACATCCAACGTCCAGAAACTTTTTTTAAGACTCATTCTCTCGCCTCTCTCAATAgataagtttatttatttataacagtaaaagctgatagtttttttaatacaaattaaaccatgGTAACAAGGATTAATCCAAACATTTGTTGCATGTTGCAACATAGCTTTTGAAATAGGTAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77505 lncRNA upstream 204558 13877311 ~ 13930740 (+) True G61904
TU77495 lncRNA upstream 244870 13888151 ~ 13890428 (+) True G61895
TU77507 lncRNA upstream 250182 13882825 ~ 13885116 (+) True AMCG00020241
TU77473 lncRNA upstream 342354 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 383935 13751087 ~ 13751363 (+) True G61871
TU77650 lncRNA downstream 133 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 1139 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 59497 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 105578 14241865 ~ 14288834 (+) True G62039
TU77711 lncRNA downstream 209009 14345296 ~ 14401302 (+) True G62062
AMCG00020268 mRNA upstream 36649 14085133 ~ 14098649 (+) True AMCG00020268
AMCG00020266 mRNA upstream 79568 14052358 ~ 14055730 (+) True AMCG00020266
AMCG00020263 mRNA upstream 112971 14000227 ~ 14022327 (+) True AMCG00020263
AMCG00020264 mRNA upstream 140159 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020262 mRNA upstream 159739 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020273 mRNA downstream 69920 14206207 ~ 14232268 (+) True AMCG00020273
AMCG00020271 mRNA downstream 121285 14257572 ~ 14259160 (+) True AMCG00020271
AMCG00020272 mRNA downstream 125695 14261982 ~ 14272204 (+) True AMCG00020272
AMCG00020277 mRNA downstream 158446 14294733 ~ 14302999 (+) True AMCG00020277
AMCG00020275 mRNA downstream 178105 14314392 ~ 14332409 (+) True AMCG00020275
TU77582 other upstream 184251 13948426 ~ 13951047 (+) True AMCG00020267
TU77503 other upstream 268735 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 300466 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 784586 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1515481 12615792 ~ 12619817 (+) True G61491
TU77751 other downstream 331513 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2678087 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3322873 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3792041 17928328 ~ 17928904 (+) True G62895
TU78775 other downstream 3922271 18058558 ~ 18061864 (+) True AMCG00020408

Expression Profile