RNA id: TU79678



Basic Information


Item Value
RNA id TU79678
length 313
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G63681
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 22549415 ~ 22549727 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTACTTGCGCATCATGTCTTGGACACCCTGCTTGACCTTGGCGAAGGTGACAGTCTCCAAGCGGTTGAAGAGCATGCTAACAATAGTGTCCATGCTATGAAACATCTGCgccaacaccttgaacttgtagGGCAAGGTCAGGCCTGGTGGTACGTCCTGGGCAAGAGTGTGGTATCGCTGGTAAGCCGGCACTTCCTCactgcagaacaaaaaaaaaaaaaaatcagacacCTTCACCACAGTGTAAAGCCTATTACTTGTCAATGAAGTACTGAGGGTTCCCACACAAATCagatttcccccccacccccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79677 lncRNA downstream 3358 22545768 ~ 22546057 (-) True G63680
TU79666 lncRNA downstream 102865 22440792 ~ 22446550 (-) True AMCG00020489
TU79624 lncRNA downstream 129672 22415335 ~ 22419743 (-) True G63634
TU79616 lncRNA downstream 158200 22383517 ~ 22391215 (-) True G63629
TU79614 lncRNA downstream 164497 22382364 ~ 22384918 (-) True G63628
TU79679 lncRNA upstream 220 22549947 ~ 22550167 (-) True G63682
TU79680 lncRNA upstream 1793 22551520 ~ 22551798 (-) True G63683
TU79681 lncRNA upstream 2273 22552000 ~ 22552303 (-) True G63684
TU79682 lncRNA upstream 2655 22552382 ~ 22552583 (-) True G63685
TU79826 lncRNA upstream 512331 23062058 ~ 23068200 (-) True G63799
AMCG00020492 mRNA downstream 36471 22474293 ~ 22512944 (-) True AMCG00020492
AMCG00020489 mRNA downstream 82648 22444305 ~ 22466767 (-) False AMCG00020489
AMCG00020488 mRNA downstream 194889 22352946 ~ 22354526 (-) True AMCG00020488
AMCG00020482 mRNA downstream 224450 22321085 ~ 22324965 (-) True AMCG00020482
AMCG00020483 mRNA downstream 241940 22270714 ~ 22307475 (-) True AMCG00020483
AMCG00020493 mRNA upstream 3121 22552848 ~ 22579832 (-) True AMCG00020493
AMCG00020494 mRNA upstream 33931 22583658 ~ 22588193 (-) True AMCG00020494
AMCG00020495 mRNA upstream 52213 22601940 ~ 22616819 (-) True AMCG00020495
AMCG00020498 mRNA upstream 228010 22777737 ~ 22789084 (-) True AMCG00020498
AMCG00020502 mRNA upstream 240726 22790453 ~ 22824939 (-) True AMCG00020502
TU79676 other downstream 4726 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1236810 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 4509455 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 4533555 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 4552398 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 604965 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 2127020 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2561383 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2571371 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2659332 25209059 ~ 25211063 (-) True G64260

Expression Profile