RNA id: TU79818


Basic Information

Item Value
RNA id TU79818
length 1984
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G63791
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23068319 ~ 23070302 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGACACAATCAGATGTCCATTATGAAGACTATATGCCAATGCTAATAGGTCAAATAATCCATTTGGTCACATTTTTCAACACAATAATTCTACAAGGTTACATAACATCCTGGTTCATGTAAATCATTTATGGTTTTATTGgagataaaaggaaaaaatactcTCAGCCACCATAGTCATATTCTATATGTTAACATATATTAAACTGTGATTACTGAACCAACATAATGCAGTGTACCATAAGAGGTTAGCTGgaacaataaatatacaatatcttTGTGTCATgtacatataattaaacatgGGGGGGAGGAATAAAAGTAGCCAAGTAgttcacaaaaaaatacaaatatacagtacaaatctatttttattcaaaacaagtacaaataaaaCGCAACAAAATATAGTTATTAATGCTTTTGAAAGTTCAGGTAGGTGTAGGGTAATTCTAAGAAAAGGGAGCACTTGGGTAGACAACTCTAAGGCTTCTGATAAGAATTAATACATATTGGTACGGCCATTAGATATTAAAACTCACTATACAAGTTTATACAACCTGGATTATACTTGAGGATTCAATATTACATCGACATCATTGcatatttttttgcagtttttataaaaaaaatttttaaaaaaagtcaTACGACACTTAAAAGCGGTGTCACATAGTGCCAAAAGTACATGTCTGATTTCATACTACATATGATTAAAACTTTACCATTTCCCCAACTCATTCACACAGTCAACCATTAGCTGCCCTGTCACccctgtttttattaaatctcTGACCATCTAGTAACCATTATATCTAACTACTCACCCAGCGGTTTGTTTCCATGAGATAGAGTTGGCCATACGATGCTTTTGCTGGTTGTCTGTGCACTGTCATGTCTACAAGAGGGAACATTTCCCAGAATCCAAAAACAATCTCTTAAATCAGTCTGTCTGCAAAAGGGTGGACACTGCTACTTctacaagaacaagaaaaaaggaaactgctgtgctttgcagtatatatatatatatatatatatatatatatatatatatatatacacacacacacacacatacaaacaagacattttaaattctgctaGTGATATAGTATATAGGCCATATCAAACTTCACAAGCCTCTCCCACAACCCATTCATAGGTTAATAGGATTCATTTGTAGACTTGTCAATTGGAtcactttttctttccagtCCACTTAAtttcctctcctcttccttctctaCTTTCCGCTAACCGGCATGTTTGGCAGACATTGCTGAGGACAGATTAAGGTATGGCAGCATGCATGACTTCCACAGCATCTACTAAAATCACCTACAGGGGCAGACAGCCCTCTCAGCCTCGCAGGCCTCTGGGTTTCCTAACCTTTGTCCCAGTGAGGCGTTCATACTGCCTTAAAATAGCACaggcaacaaaaacacaatcttCACTTATCTGCATTGTACCTCATTATTTTTGTAGCTTTGCATATCATTGCATATTCGAAATGTAGCAATAATGGCATCACATAACAGAAAATCCCACTTCATCCTTTTATCCTTGCCTTGTAAATTGCCCCCCATATATTAGAATAGGACtcatatatatcatttttatattttaaataaaagattgcATCACTGTTCACTCAAACCACCAGCAGTATAATCATGGCTCACCTTCTCTAatggaaacaaaacacttcTCCTTAACCCAAATTTGTAATCACCTTTccctgtcaaataaaaaaaacagccaatCTGGTATGTAAAATACAACCACTGATgtacaaagcaatacaattgTGTCATTGCTTAAGAAAGGAATTTGCTGACCTCTCTtcaaaaaaggaagaaaaacaaaatgtcacctTTGCCTGTCATTCTATATACATATGTAGCTGTTCTTAAGGCATTATTGACAAGGTTGGTACAATGCAAAACACATACACGTTATATATGTAGAATGCATgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79826 lncRNA downstream 119 23062058 ~ 23068200 (-) True G63799
TU79682 lncRNA downstream 515736 22552382 ~ 22552583 (-) True G63685
TU79681 lncRNA downstream 516016 22552000 ~ 22552303 (-) True G63684
TU79680 lncRNA downstream 516521 22551520 ~ 22551798 (-) True G63683
TU79679 lncRNA downstream 518152 22549947 ~ 22550167 (-) True G63682
TU79827 lncRNA upstream 99 23070401 ~ 23070820 (-) True G63800
TU79863 lncRNA upstream 101506 23171808 ~ 23182107 (-) True G63829
TU79873 lncRNA upstream 123842 23194144 ~ 23194529 (-) True G63834
TU79875 lncRNA upstream 132668 23202970 ~ 23205921 (-) True G63836
TU79897 lncRNA upstream 208490 23278792 ~ 23279073 (-) True G63858
AMCG00020510 mRNA downstream 30505 23033583 ~ 23037814 (-) True AMCG00020510
AMCG00020501 mRNA downstream 89695 22975667 ~ 22978624 (-) True AMCG00020501
AMCG00020503 mRNA downstream 123705 22938797 ~ 22944614 (-) True AMCG00020503
AMCG00020504 mRNA downstream 137327 22917372 ~ 22930992 (-) True AMCG00020504
AMCG00020502 mRNA downstream 243380 22790453 ~ 22824939 (-) True AMCG00020502
AMCG00020509 mRNA upstream 548 23070850 ~ 23086811 (-) True AMCG00020509
AMCG00020511 mRNA upstream 94135 23164437 ~ 23168767 (-) True AMCG00020511
AMCG00020516 mRNA upstream 195705 23266007 ~ 23276284 (-) True AMCG00020516
AMCG00020521 mRNA upstream 802112 23872414 ~ 23899771 (-) True AMCG00020521
AMCG00020523 mRNA upstream 849409 23919711 ~ 23923789 (-) True AMCG00020523
TU79676 other downstream 523630 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 1755714 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 5028359 18037042 ~ 18039960 (-) False G62961
TU78814 other downstream 5052459 18006168 ~ 18015860 (-) True G62961
TU78823 other downstream 5071302 17994544 ~ 17997017 (-) False AMCG00020403
TU79847 other upstream 84390 23154692 ~ 23161900 (-) True G63819
TU80215 other upstream 1606445 24676747 ~ 24677810 (-) False AMCG00020561
TU80345 other upstream 2040808 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 2050796 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 2138757 25209059 ~ 25211063 (-) True G64260

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069374 False 3108 lncRNA 0.32 1 NC_007118.7 69400786 ~ 69403893 (-)
grasscarp (Ctenopharyngodon idella) TU216100 True 3382 lncRNA 0.35 1 CI01000043 2291120 ~ 2294501 (+)
striped catfish (Pangasianodon hypophthalmus) TU206673 True 4990 lncRNA 0.40 2 NC_047605.1 2045441 ~ 2050452 (-)
mexican tetra (Astyanax mexicanus) TU64371 False 2913 TUCP 0.35 2 NC_035901.1 37221341 ~ 37224278 (+)