RNA id: TU80010


Basic Information

Item Value
RNA id TU80010
length 1445
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G63947
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24070716 ~ 24072160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTCAATACATCTATACCATTCTAAACATGTTAATTCATAaccttctttaaaaatattgaaaaccaTTAGTAGGCGAAATCAATAGATTAGATACATactatagatagatacataaatagaCACCTAGACAGAttataaatggatacaaaataataggCAACTGTAATATCATACATACCATAACCCATCTcacatattttcacaataattaaatcCCCTATATCAGTCAATGTACATAACGGTATTATAAATCTAAATtatgaatgtttatttgttttttgattcaCAACGATGCATCAGCTTCTCCTCATTGCTTAATTTCTGCCTAATAGCCCTCTTCACCTCGGCTTCTGGGCAACTCATCTTCTTTGTGACATATGCAAAAACatatattgaatgtttaaaatagaGAACAGTGGTAAAAGACAATACTCTCTCTTTCTGATTTTACttagaaattatatatacatatataaccaTTCAGTTAGAAGAAGCAATTGGGACAAACTTGGTTTGCATCAAGCAAATAAGCAaagttttaaaattgttttggGCGAAGGTTGCCCCAATTGTTTCTTCAAActtgtctgttttaatttcaaacatttctttTAAAACCTCTTGTTCTGTTTCCAATATGTTTTCGTATgggctcaaatgtattttttcagaactACATATTCCATCAACCTCCTGCATGTGAGTCCATATGAAGACCTCTTGCAAGTTTTTCCATTAATGACAGGGTGATGAATATGATGAAGTtaaagaaagtttaacatgtgatTTATGCAATAATTATGGTAATTGCTTAGTGTATTTGACAACAAGGTGTATgtattggggggtgggggtaagGGAATTAACAAAATAGATACTTATTagaaatattgaatattatctaagtcccccAAGTTTGCTAACTACCCCAGAGTCCacatcattaatatagattagaaactgcaaaggccctagtactgatccctgtggaactccactaacaacctcactccagttagaagcaactcctctaatcgacaccctctgtttcctatacatcaaccagttcataatccatctacttacattaccctgaatgcctgcagcttccaatctgaggatcagtctttggtgtggaaccttatcaaaagctttttgaaaatctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaacaAATTCTAATTCCGCTGGGAATGTCAAAACTCCGCGCCTTTGCCGTAGATACAACTATTACCTATTATTGTCAGAAAGTGAGTCCGCCTCATTGgggtatgttttcttttcttttcctttcttttctattttctttgcacgttttctcttctttttctaaTCTTTTAAGTAGGTCTTCAAGGTCAGCTTTGATttctaaacacaaataaaactaagcAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79992 lncRNA upstream 5379 24033037 ~ 24065337 (+) True AMCG00020529
TU79949 lncRNA upstream 170962 23898507 ~ 23899754 (+) True G63898
TU79937 lncRNA upstream 172961 23850350 ~ 23897755 (+) True G63890
TU79811 lncRNA upstream 983783 23086378 ~ 23086933 (+) True G63789
TU79809 lncRNA upstream 993403 23076901 ~ 23077313 (+) True G63787
TU80011 lncRNA downstream 2889 24075049 ~ 24076475 (+) True G63948
TU80015 lncRNA downstream 16354 24088514 ~ 24093237 (+) True G63951
TU80086 lncRNA downstream 160579 24232739 ~ 24242677 (+) True G64009
TU80136 lncRNA downstream 416744 24488904 ~ 24540707 (+) False G64048
TU80133 lncRNA downstream 448676 24520836 ~ 24525575 (+) True G64048
AMCG00020529 mRNA upstream 2259 24062753 ~ 24068457 (+) False AMCG00020529
AMCG00020528 mRNA upstream 8041 24057094 ~ 24062675 (+) True AMCG00020528
AMCG00020522 mRNA upstream 99142 23925180 ~ 23971574 (+) True AMCG00020522
AMCG00020520 mRNA upstream 212913 23813512 ~ 23857803 (+) True AMCG00020520
AMCG00020517 mRNA upstream 388414 23657711 ~ 23682302 (+) True AMCG00020517
AMCG00020530 mRNA downstream 88117 24160277 ~ 24163714 (+) True AMCG00020530
AMCG00020535 mRNA downstream 130154 24202314 ~ 24210374 (+) True AMCG00020535
AMCG00020536 mRNA downstream 143911 24216071 ~ 24225069 (+) True AMCG00020536
AMCG00020534 mRNA downstream 153841 24226001 ~ 24232399 (+) True AMCG00020534
AMCG00020532 mRNA downstream 173381 24245541 ~ 24249251 (+) True AMCG00020532
TU79996 other upstream 15124 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 16839 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 995771 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 1697956 22358828 ~ 22372760 (+) False AMCG00020487
TU79495 other upstream 1928559 22135368 ~ 22142157 (+) True AMCG00020470
TU80130 other downstream 406675 24478835 ~ 24482114 (+) True G64046
TU80333 other downstream 1001897 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 1005982 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1478751 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 3343836 27415996 ~ 27418520 (+) True G64730

Expression Profile