RNA id: TU80136


Basic Information

Item Value
RNA id TU80136
length 1485
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G64048
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 24488904 ~ 24565492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAGATCTGTTCTTTCTAACACTAACACAGTTTATAACATCTGCAttgccttttcatttcattgttttgtacTTGCCTAATTTCCCTTTGGGTAGACTGTAATCATTCTAAATAACCATTCATGTCAAATTAGCTTCCGAACTCAGATGTGAGAcccaagacacagagagctctgcTGACTCTTAACTAGTTATTTTTGCAGTTACAGTTAATGTGcaagttttttaaagaaacgcacgcacacacacacacacacacacacacacacacacacacacaattacgaTTATTTTAGTCAAAACAATTGCTTCCACTATCTCCACAGAAACAGTGGAGAAAAACAATGAGACAATACACTGATCCATAAAACTTTATCttatatgatttttaaataatgcccTTCTAACGATGTCCGATGTTTTACTCTCCCCACCATTTCAAGGCTTTAGTCCCAAGTAGATAAAAGGCATCAGCATAAAGCATCTATAAAGGTTCTGCAAGCCAAATCTCTATTATTTCTTACAGAAGGAACaagaacccccccaccccactcaaACCCATACCCGCACACTCCTACACCCTCAACTCTCCTTGAACTGTGCTTCATAAagaaatatttcacaaatttTAGTTCTAATCAGTTAAAGGGTTAACATGTCAAgtagaaaagtaaaaatgacCTTTTAAGTGTTCAGAATTTAGAACCCGGCACTGCCCAACCTAGcaaaaaagtgacaaaaaatATGACTGAAACGGTAAACGCAAATAAAACATCTCACtgcaggaataaaataaaataaaacactcatcAGTAACTTTAgttaatcacaaaacaaaaactcttaGTTCTACTTCAAGCATTCCTTTGCGTTAGTATATAGTGCCACTTCTGCAATAGGTGGATGCTAAAAGGAGCCAAATAGTGTCACAATCATAAAAGTGtccctaaccctaaaacctaagctaactaaaaaaataaattaaaaaatagacatgaaCAAAAGAGTTTGCATGCACATTAACTACAGACATGACTTATTTTTTTTGACAGTGACTGTTATCTGGCAAAACATTGGACTCTTCTCTGTAACACCcattatacattttgcacattGTTAATCTCTGAAGTCCCACTTCGAAGCTGGTGCGGGGCTTCCGTTCTCTAAACGCCGAAAACGTCTTTAATTCATAATCTGCAGGCCTCAATGATAGGCACCATTTCACACCTACTTTCTGCATTCAAGATTGTGTATCTAATAGGTTCTGACTCTGAATACACCATATTGAAGTGCTTCACCCCCTCCACCCTCAAATCCTTACAATTtctgtgtcaaaataaaatgtttttttgtttttgttttttttttacattcactGAAACATTTGctccttcaattaaaaaaaaaaaaaaaaaaattgaaagtcCATCCTGAAACAATGCAGGATTCCATCAGTTTGTAGTAAAAGCACCAACATGAGTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80086 lncRNA upstream 246227 24232739 ~ 24242677 (+) True G64009
TU80015 lncRNA upstream 395667 24088514 ~ 24093237 (+) True G63951
TU80011 lncRNA upstream 412429 24075049 ~ 24076475 (+) True G63948
TU80010 lncRNA upstream 416744 24070716 ~ 24072160 (+) True G63947
TU79992 lncRNA upstream 423567 24033037 ~ 24065337 (+) True AMCG00020529
TU80159 lncRNA downstream 53423 24594130 ~ 24597787 (+) True G64069
TU80221 lncRNA downstream 151290 24691997 ~ 24695554 (+) True G64121
TU80222 lncRNA downstream 155895 24696602 ~ 24696809 (+) True G64122
TU80261 lncRNA downstream 269257 24809964 ~ 24811811 (+) True G64158
TU80291 lncRNA downstream 404554 24945261 ~ 24946210 (+) True G64185
AMCG00020543 mRNA upstream 35304 24447276 ~ 24453600 (+) True AMCG00020543
AMCG00020537 mRNA upstream 144969 24330886 ~ 24343935 (+) True AMCG00020537
AMCG00020531 mRNA upstream 180744 24304634 ~ 24308160 (+) True AMCG00020531
AMCG00020533 mRNA upstream 217871 24251075 ~ 24271033 (+) True AMCG00020533
AMCG00020532 mRNA upstream 239653 24245541 ~ 24249251 (+) True AMCG00020532
AMCG00020552 mRNA downstream 73166 24613873 ~ 24619867 (+) True AMCG00020552
AMCG00020553 mRNA downstream 81837 24622544 ~ 24630704 (+) True AMCG00020553
AMCG00020551 mRNA downstream 99091 24639798 ~ 24641669 (+) True AMCG00020551
AMCG00020556 mRNA downstream 135982 24676689 ~ 24688415 (+) True AMCG00020556
AMCG00020562 mRNA downstream 165728 24706435 ~ 24707136 (+) True AMCG00020562
TU80130 other upstream 6790 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 433312 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 435027 24051989 ~ 24053877 (+) False G63939
TU79808 other upstream 1413959 23070411 ~ 23074945 (+) True G63786
TU79558 other upstream 2116144 22358828 ~ 22372760 (+) False AMCG00020487
TU80333 other downstream 533350 25074057 ~ 25076690 (+) True AMCG00020572
TU80336 other downstream 537435 25078142 ~ 25084754 (+) False AMCG00020573
TU80525 other downstream 1010204 25550911 ~ 25553320 (+) True G64372
TU80958 other downstream 2875289 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 4332923 28873630 ~ 28874072 (+) True G64887

Expression Profile