RNA id: TU80329


Basic Information

Item Value
RNA id TU80329
length 249
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G64218
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25052204 ~ 25052452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGGTTCTCTAAGAGTGCGTCCCCTGGAGAACAGGAATATTGAACCTCCCTGTGCCGCAGCCTCTCTGCACTGCATTGCAGCTCCGCTCACCTGAGGAGCAGTTGTCGAAATTGAGGTCCCCCAAAATCACATCGAATGCCACCTGATCCTCGGGCCCCTGCGCCCCATTGGGATGGGAGGTAGATTTCCGAAACTCTGACAGCCAGGCCAGGAGCTGATCCAGCTGCTCGCAGCGAACTGCGGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80324 lncRNA downstream 50547 25001347 ~ 25001657 (-) True G64213
TU80292 lncRNA downstream 105994 24945298 ~ 24946210 (-) True G64186
TU80273 lncRNA downstream 195580 24854936 ~ 24856624 (-) True G64170
TU80247 lncRNA downstream 295899 24753882 ~ 24756305 (-) False AMCG00020560
TU80226 lncRNA downstream 350868 24701133 ~ 24701336 (-) True G64126
TU80332 lncRNA upstream 11684 25064136 ~ 25064342 (-) True G64221
TU80354 lncRNA upstream 41579 25094031 ~ 25094326 (-) True G64235
TU80357 lncRNA upstream 47585 25100037 ~ 25101087 (-) True G64238
TU80346 lncRNA upstream 58658 25111110 ~ 25119596 (-) False AMCG00020581
TU80368 lncRNA upstream 83980 25136432 ~ 25139385 (-) True G64247
AMCG00020574 mRNA downstream 51076 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 101331 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 205776 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 231143 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020565 mRNA downstream 251421 24791942 ~ 24800783 (-) True AMCG00020565
AMCG00020581 mRNA upstream 58659 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020589 mRNA upstream 220141 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 237050 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 273341 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 278621 25331073 ~ 25348318 (-) True AMCG00020591
TU80215 other downstream 374394 24676747 ~ 24677810 (-) False AMCG00020561
TU79847 other downstream 1890304 23154692 ~ 23161900 (-) True G63819
TU79676 other downstream 2507515 22543842 ~ 22544689 (-) True G63679
TU79413 other downstream 3739599 21312202 ~ 21312605 (-) True G63464
TU78822 other downstream 7012244 18037042 ~ 18039960 (-) False G62961
TU80345 other upstream 58658 25111110 ~ 25112551 (-) True AMCG00020581
TU80367 other upstream 68646 25121098 ~ 25139385 (-) False G64247
TU80385 other upstream 156607 25209059 ~ 25211063 (-) True G64260
TU80401 other upstream 189717 25242169 ~ 25242511 (-) True G64271
TU80414 other upstream 222089 25274541 ~ 25276417 (-) False AMCG00020589

Expression Profile