RNA id: TU80404


Basic Information

Item Value
RNA id TU80404
length 2310
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G64274
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25261926 ~ 25264235 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGACTGGAGTGCGCTCTGCCACAGTCACAGAAGATTCCTGAATGACAATTATAGAAGCTTCTCCACATTTCGCAGACATTCTTCTCCCTGGCTTGCTCTAAAATTAGCTTATTTCTTAGAGTGAGTTCATTATCGTTAACACAACTGCAGTGTTGTCTTGGATATAATCATTAATACTGTcattatgtttttggttttcattttaaaattaaacaacattGAACAAGTCTTGCAGGGATTCGTATATAAGCCTCCTGTATGATTTATAGGACAGTACTTTTGCGTACAGGACAGTGATATTACAGATAGGATTTTATTAGTGGAATGACCTTGTTTTGCTGCAGTAGCAATGTCAAAACCTTGTGGAAATGCAAATCACTACGCTAACAGAATACTTTCCAGTCTAAAAGGTGTTTTAAGACTGCCTTCTTAGACACCTACTGTCTGCTTTCtattattcattaaatatttatttttctggtcaTGATAGCTAAACCCTAAAAGAGATTTTGAATGAGCGGACATACATGGTGAATGCTGTTCTTAGTGTTTCTTTGGTAACTGTAACCAGTGAAACGTCTCCATTCAAGCACTGCATTGTTAAATATGCCTGCTCATACACAATCTCCTGTGTTATCTTCTTAACACAAAACTCTTAGTATAGTGATACTTGTCTTATGAATACCACCCCCTTGGTATAAACCTTCATACTATTTCACTGAAAATAAGATTTAACTGTAATCCTTTTCCAGTAGTAACCCTCCACACACCATCATCTAGAGAAAAgtctaaaaacattttggatgCAGGGGGGAGGCAAATGATACGATCACATTTGTTACtggattattatttctttaaatatataaatacaacaaaacgtACAACTTACACATGCTAAAAGCCATTACTGTGTCTTAAAGTTgaaagaggagaagaaaaagcttatcagtttatatatttaaattatatatggttgcatttttctattttgttagGAAAGTCACAATTAATCTCTTCAGGTAGGATTGATACCATTAGATACAAGGCGGTATCAAGGAGTTTGGGTGCGAGTCCATAGGCTACCTTGTTTAGCCATCAGCTGAGCAGCACAGTAGAAAAGCACTGACAATCTGTTGCACCAGTCTGCAGAAATTGGCTCCCATTTGTGCTGATGAACTGAGATATATTCCTAGACATAGTGcggagttttgttttttctggctTCCCAGTGTGAAATCCACACAACAAATATTTAGAGGAAACTGTTTCCAGTGGAGGTGATTCAAACTCAGATCCCCTTTGCGATGTGCTCTTTCAATGTGCTGCACAAGGAAGGGGTGAACAATCCTCTGAGTCGTTACTGCGGCGTCAGAATTTCACATTCAATCACTCCAGAGAGttggcacagacagacagaggcacGTGTGAAGGTCCTCACTTGGGGCTGGTCCAGGGGATGCTAGGGAGAGGCAGGGTGTGCAGGTCTGGGACCCCCCCAGCATGGAGGACTCTGGCAGTGGAGAAGGGCTCAGAGGTCAGGGAGTCTTCCGGCGGGGAGACCAGCCACCCCTGGTGTGGAAGGGAGGACGAGGAATGGCTCTGCTGGGCACAGTCTGAGGACAGAATCATGAACAGCTGGGAGTCCATGGCAGAGAGGTCTGGGAGGGGTGGGTGGGGCATAGGGGGCCACAGGTAGGAGGCCGGAGAGAGTGGGGGTGAGGTATGCGTACTAGAAAGCCCATTGCTGGGCAGGGTGTGCTCTCCCAGGACACTGGCTTCCATGTGGGATTCAGGAGCAGACTTGTGCATCCCTGGAGGCACAGATGCCAGGCTAGACTGGGCCAGGGAGGGCTGCCTCACTGCCGGTGGCACTAAGCTCAGGAGATCTTCAGCAGTGTTGGGGGCTTCCAGTCTGGCGATAGCCTCGTCATTCAAGATGATGTCCAGATCATCCTGGCACAGCCCGTAGTGCCACAGCAGTTCCCAGATGCTGACGTTGGTGGGAAATTGTGGCCAGGCCTGTGGGCAAGGTGCCTCGGGAGGCCGGAAGATGTAGGGAGGCTCGTCCTTGCTGATGTTTGCCCCTATGACGGTGCTTTGGCAGGGCCCCTGGGCTTTGTGCCGGCTCTCTACCTGCTGCAGAAAGGCACGAGCACTAGGGTGCAGGACGTCAGTGCTGTCATAGAGCAGGGACAGGCTGTCCAAGGAGAAGCGCTCTTGTTTGGCTCTCTTCAACATGTGCTCCTCTCCCTCGGCATCCCTGTGGGCATAACAGCACCAATGAAACACTACAACAAACTGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80380 lncRNA downstream 45233 25203124 ~ 25216693 (-) True G64258
TU80368 lncRNA downstream 122541 25136432 ~ 25139385 (-) True G64247
TU80346 lncRNA downstream 142330 25111110 ~ 25119596 (-) False AMCG00020581
TU80357 lncRNA downstream 160839 25100037 ~ 25101087 (-) True G64238
TU80354 lncRNA downstream 167600 25094031 ~ 25094326 (-) True G64235
TU80488 lncRNA upstream 197192 25461427 ~ 25461642 (-) True G64340
TU80489 lncRNA upstream 199305 25463540 ~ 25464116 (-) True G64341
TU80490 lncRNA upstream 200642 25464877 ~ 25465350 (-) True G64342
TU80578 lncRNA upstream 376335 25640570 ~ 25643373 (-) True G64412
TU80594 lncRNA upstream 427173 25691408 ~ 25779211 (-) True G64418
AMCG00020581 mRNA downstream 149439 25111111 ~ 25112487 (-) False AMCG00020581
AMCG00020574 mRNA downstream 260798 24972749 ~ 25001128 (-) True AMCG00020574
AMCG00020575 mRNA downstream 311053 24947221 ~ 24950873 (-) True AMCG00020575
AMCG00020566 mRNA downstream 415498 24843010 ~ 24846428 (-) True AMCG00020566
AMCG00020564 mRNA downstream 440865 24814766 ~ 24821061 (-) True AMCG00020564
AMCG00020589 mRNA upstream 8358 25272593 ~ 25284209 (-) True AMCG00020589
AMCG00020590 mRNA upstream 25267 25289502 ~ 25302972 (-) True AMCG00020590
AMCG00020592 mRNA upstream 61558 25325793 ~ 25329845 (-) True AMCG00020592
AMCG00020591 mRNA upstream 66838 25331073 ~ 25348318 (-) True AMCG00020591
AMCG00020594 mRNA upstream 209020 25473255 ~ 25479762 (-) True AMCG00020594
TU80401 other downstream 19415 25242169 ~ 25242511 (-) True G64271
TU80385 other downstream 50863 25209059 ~ 25211063 (-) True G64260
TU80367 other downstream 122541 25121098 ~ 25139385 (-) False G64247
TU80345 other downstream 149375 25111110 ~ 25112551 (-) True AMCG00020581
TU80215 other downstream 584116 24676747 ~ 24677810 (-) False AMCG00020561
TU80414 other upstream 10306 25274541 ~ 25276417 (-) False AMCG00020589
TU80419 other upstream 34567 25298802 ~ 25302981 (-) False AMCG00020590
TU80433 other upstream 65849 25330084 ~ 25330570 (-) True G64298
TU80656 other upstream 634193 25898428 ~ 25918630 (-) False G64470
TU80657 other upstream 634193 25898428 ~ 25905611 (-) True G64470

Expression Profile