RNA id: TU80525


Basic Information

Item Value
RNA id TU80525
length 2410
RNA type TUCP
GC content 0.51
exon number 1
gene id G64372
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25550911 ~ 25553320 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAGGTCACAAGAGAACAACACTAAGTAGTTTGCTAGCTTCTTTAATATGTGCACTGGGTGCATTCAaccaacaccccccccacacacacacctacacacaaaaTCAAAGAACAGATGAAATAGCATATGGGTTGCTTTTAGACAGCTGTTGattcccctccaccccccaaggttacattttgttgtacaTAAACCCTGCACTGGTTTTACACGGCACCATTTTCCTGTCATCAACCAAATGCAATTGTAATTTTTGTTAATATGACGAACAGACTGTTATTATCAAGGTTAGCTGAAGCTGGAtgagttttcttttacatatggGTGTTTACAATTCAACTCAAAGTTAACCACCCATTTCCCAGCCGCATTTATCcaagtatttatgtttttaatcttcTCTTATTCAAGTACatggatatttatatattatcttTAAGTCGAAAACAGTGGTTGCTCCCTCCCACTTCCCACATCACATGTGGTTTGTAAACATTACACAAATTATAGAACAATATTTTCAACTTcgattacaaaatgaaaaaaaagtctggTAGAAAAATATTTAAGCTTTTCTCTCATAGTGCATTTTTCatgtactgtaaaaaaaagaaaagaaaaaggaggaaaaaaggcctttggtttcaagacaaaaTTCTGCTGAAAGAGTCGATACAATCACACGTCTGTCAGGGAGCTTGGTCTCAGTTTTCTGTAAATGAAGTGAATAATGACAATAAGTAACATCTCCGATGTGCTGCTCAGGGCCACGATGAAGGGCGCTTGGGAGGCAAAATCCGCCTCGACGCGACGGAAAGACAGCTGCATGACGGCGAGCGCCAGGAGACTGTTCTGCACTCCTATCTCTATACTGACCGTTTTGCGATGAGGCAACGATAGTCTCAAAAGGAAAGCCATCAGATAACCCAAAAGCAGGCCAAAAATGGGTACTGTGACCCCAACTGCTATAATCTGTGGCTTGACGTTGGCAAGTATCGAGGAGCCCATTTGGTACGCCATGAAAATGCCACCCACGATCAGGATGAAACTGAAGGGCCGGATGAGGGTGAGTAGGACCCGGGACACGCTGGGGAACTTGTATTTGATGAACATCCCTGTGGAGATGGGGATGGCGATGAAGAGCAGCGTGACCAGGATCTTGAGGAATGGCACATGAAGGGTTTCATGGACGTTGAGGAGTCGTCCGTAGATAGTGGAGGAGAGAGGCATCATTCCCGTGGCCACCACGGTGGAGATGAGTGTCATGGAGATGGCTAGGGTCACATCTCCGCCCAGGAGCAGGCTGTACAGAtatccccctccaccccccgGAGCTGAACATGTAATCACCAGCCCCAAAGAGAGGGCTTTGGGAAGAGAGGCAATCCTAGACAAGGCATAGGCGTACAAAGGCATCACCACAAACTGGCCAACTATTCCCAGCAGGACCGGGTGGGGCTGTTTCAGCAGCCCCCGCAGCACGTCGATTTCTACCTTGCATCCAAATGCGCATTTGTTGATGAAGATCAGAGGCAGGAGGGCGAAGAGCACGGGGTGCTCGGAGAAGTGGGACAGTCCGCCGGCGGTCAGCAGCGCCGCGTCGTCGCTGGGGGCCACTTTAATCACATAATCCCGCCTCTCTTCTATCAGCATCGGATTGGAGTCCTTGTCCAAATCCAGCAGCTGGATGAGCAGCGGGGCCGAGCCGGCAAACCCGGAGCGGATACTGACCTCGTAACTTCTCACCGGCCCCGCATTCCAGCTGTCGCTGACGTTTAAAACAGACAACACGTCGGTGTCGAGGGATCTTACGCTCACCGTCGGCTTCCAGCTCTCGCTGCCCTGCTCAGTCGCACTGCTGTACCGGCTGGAGATCACGATCACCCCTTCGGTGTTCTCGGGGAATTCAAATTCTACCGAAGTCCCGTCTCCTATGTTAATGTACCTCGTATTGCTTTCATTTATCCGCGCCGTCCAGTTATTACTGCGGCTTTCAGCCAACAAGTCCGTAGCTCCGGTCACCGAGAGCAGCCAGCACAGCGCCAGCACTGTCCTCATCGTCGTGTGTTGGGAGGGCGGGGGGCGCCGCGCAGACACGCCGCTGCTCGGTCCTCCCCAGCGTGCCAGACACGGTGCTCCTCACCGCCGGCAACAACAACTTCGCCGGTCCGCCGCCGCCGGGATCGCAATCACGAAGTCGGGCTGCGCGTCTGAAGTCCGCTGGTTATCCATCtaggcattttattttctccccagGGCCGACGTCACCACTACGGGTTTGAGCAGAAACTCTGATAGTCCATCGATTTGACCTGTTTCCTGCTTTCTCTTCCGGGCAGACAGCACATCTATCACAGCGCTGCTCCCATCTGGTTGCTTGCAGGGTGGATGGGTGCGCTCCCGCTCccg

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80515 lncRNA upstream 14864 25535753 ~ 25536047 (+) True G64362
TU80482 lncRNA upstream 91115 25459218 ~ 25459796 (+) False AMCG00020585
TU80435 lncRNA upstream 217229 25332620 ~ 25333682 (+) True G64300
TU80436 lncRNA upstream 217734 25332259 ~ 25333177 (+) False G64300
TU80432 lncRNA upstream 220353 25330081 ~ 25330558 (+) True G64297
TU80531 lncRNA downstream 16070 25569390 ~ 25571762 (+) True G64378
TU80553 lncRNA downstream 87273 25640593 ~ 25643374 (+) True G64394
TU80568 lncRNA downstream 168613 25721933 ~ 25728334 (+) True G64406
TU80576 lncRNA downstream 223087 25776407 ~ 25778982 (+) True AMCG00020603
TU80613 lncRNA downstream 266071 25819391 ~ 25819782 (+) True G64436
AMCG00020596 mRNA upstream 18548 25531176 ~ 25532363 (+) True AMCG00020596
AMCG00020593 mRNA upstream 58616 25487947 ~ 25492295 (+) True AMCG00020593
AMCG00020585 mRNA upstream 78025 25459096 ~ 25472886 (+) True AMCG00020585
AMCG00020586 mRNA upstream 92816 25405634 ~ 25458095 (+) True AMCG00020586
AMCG00020588 mRNA upstream 158050 25376181 ~ 25392861 (+) True AMCG00020588
AMCG00020600 mRNA downstream 26385 25579705 ~ 25588751 (+) True AMCG00020600
AMCG00020599 mRNA downstream 47800 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020598 mRNA downstream 128296 25681616 ~ 25687176 (+) True AMCG00020598
AMCG00020603 mRNA downstream 208815 25762135 ~ 25777517 (+) False AMCG00020603
AMCG00020609 mRNA downstream 228728 25782048 ~ 25783248 (+) True AMCG00020609
TU80336 other upstream 466157 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 474221 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1068797 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1495319 24051989 ~ 24055592 (+) True G63939
TU79994 other upstream 1497034 24051989 ~ 24053877 (+) False G63939
TU80958 other downstream 1862676 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3320310 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3455343 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3911244 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3972395 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile