RNA id: TU80568



Basic Information


Item Value
RNA id TU80568
length 868
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G64406
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25721933 ~ 25728334 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aagatttgatttggtctagcccaaaGAATGAACAGTCATCTCTACAGCTGGATTACAAGGTTTTACAAGGGATTTGAAAGGATCAGATGGACGGACTCCTGCAGTCTGCGAAGGAGCTGCTTTCTCTCGGTGCAATCAGTCGCCAGCTATTGTGTCAGGAGATTTGGAAAGCGGAGAAGCCTCCTATCCTTGAAATGGTCTGGCATCTGCACAAGGAGAACATTGTTACTTTGGAGGAGATTCTAGAGAGTCTCTGATGCTGTTGGCATGCGGTGGATGGGGAGTTTTGCTAAAACCTGCCCTCTGTTGATGTGTCTGTATCGGAAGtttcttttcaGATAGATTGTCTCTACAGGACCATAAAGGAGAATCAGCTGTGTGATCCATCCATGCTGCAGCCGTGCAAACCACTGCATCAACGGtcaacacacactgaaatacaatcaaaaaacaaatcgCTGAATAGAAAAGCTTTTATCATACACTGTACAGCTCTGACGTGGGGAAAACTTTTCCTCGAGTGACAATAAAACTCTTTGTCTTGTTTATGCAATGTCCAAACCCCTGGGAGCTCTCTAGCTCTGAAATCAGGTCTGCCAAGGGTTGTCAACCCTGATCCCGAAGAGGTTGGACTTAATTAGTCACAATCAccatgtgttcaaggtatccagtgattgataatttagagagacctgtaaaacctgcaggattgtggctctccaggaacagtcACCCCTGATGAATGCTATACCACTGTTTTAACAGAGGTGTATTGTATGTTcataatgtttaatacattttcttaattaactgTGAAATCAAATCCATAATCACACACATACCAGCTGCACTCCACAAAGATCCACAC

Function


GO:

id name namespace
GO:0007049 cell cycle biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU80553 lncRNA upstream 78559 25640593 ~ 25643374 (+) True G64394
TU80531 lncRNA upstream 150171 25569390 ~ 25571762 (+) True G64378
TU80515 lncRNA upstream 185886 25535753 ~ 25536047 (+) True G64362
TU80482 lncRNA upstream 262137 25459218 ~ 25459796 (+) False AMCG00020585
TU80435 lncRNA upstream 388251 25332620 ~ 25333682 (+) True G64300
TU80576 lncRNA downstream 48073 25776407 ~ 25778982 (+) True AMCG00020603
TU80613 lncRNA downstream 91057 25819391 ~ 25819782 (+) True G64436
TU80641 lncRNA downstream 165816 25894150 ~ 25895525 (+) True G64457
TU80673 lncRNA downstream 206571 25934905 ~ 25940113 (+) True G64478
TU80711 lncRNA downstream 366329 26094663 ~ 26096921 (+) False AMCG00020621
AMCG00020598 mRNA upstream 34757 25681616 ~ 25687176 (+) True AMCG00020598
AMCG00020599 mRNA upstream 111543 25601120 ~ 25610390 (+) True AMCG00020599
AMCG00020600 mRNA upstream 133182 25579705 ~ 25588751 (+) True AMCG00020600
AMCG00020596 mRNA upstream 189570 25531176 ~ 25532363 (+) True AMCG00020596
AMCG00020593 mRNA upstream 229638 25487947 ~ 25492295 (+) True AMCG00020593
AMCG00020603 mRNA downstream 33801 25762135 ~ 25777517 (+) False AMCG00020603
AMCG00020609 mRNA downstream 53714 25782048 ~ 25783248 (+) True AMCG00020609
AMCG00020608 mRNA downstream 81832 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020606 mRNA downstream 111370 25839704 ~ 25854564 (+) True AMCG00020606
AMCG00020607 mRNA downstream 126754 25855088 ~ 25861732 (+) True AMCG00020607
TU80525 other upstream 168613 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 637179 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 645243 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1239819 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1666341 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1687662 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3145296 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3280329 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3736230 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3797381 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile