RNA id: TU80718


Basic Information

Item Value
RNA id TU80718
length 1835
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G64510
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25985448 ~ 25989689 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTttttgaaaaaaaggaaatttatTCTGAAATGGTTGATCTCTTATAATGATGCTCTTCCAAAACTccacacaatacatacacaatttccacagttttttttccttttcccaatttttcaaaaaaataaacccagcCAACTCtcatagaaaaaaacaaaatattttcacacaccacaaaacctttcattttggtcaaaatgaaaaaactaaattgtgccACTGAACTTGTACTGAGTTTTTGatccacagttttgtttgtttgtttacagctACCTGTTGTGTACaccatacacacatttatatccATCTATACAGACGTATATAGATTGATATAGATAAATATTAACAAGAAAAAGAAGGCCGTTGTTTGTAATCAAGATAACTTTTTAGAAAATTAGAAAGCCAATCGATCCAATACCACTGCAAggacaaatcaaattaaatctcgCATGTCCAGAGGCCTCTCCAGGATACATTTCCACATACATCCTCCTCCTCATGGGACTGCAGACAGGAGGCTACATTTTAAGGcagataaaacataaaagggCACATTCAACATCTGCAATTAGGTGTGGGGAGGGGAAGGGCTCGTCTCTGGTTTAGAAACAGCCCCCGGAGGAGCAAATGCAAGGAAGTTATATGCCACTTTAACACTCTTCACAGACAGAGGGAACTCTCTGGACAAGCTCAGAGACCAACAGGATTGTGTCCCTTAAAGTAGAGCAGCATTCTCCAGTCAGGGATCTAACCAAAACTGATCTAATCAAAGACTGAAGAACGCTCTTCTGCATTAAGCAACGTATCACAAAGGAACTAACTATGATCAAAAGCACAATAAATTCAAaaccaatctttttttttttttttgcccatcCACCTTTTAAACTCTGGAAAGGTCTGTATTATTGACTTAAACAAAAAGGTTCAAGTTTAAGGTAGTTTCTATTGTTTTTGAGTATAACCATCGCTAAAGATTTCCAGTTCACTTTGGCACCCGTTTGTAAATGAGACAAAGAATCAATCAGGCAGGGTGATGCTTTCAAGGAGTGCAGTTTACTAGAAGTTCCAGTTTGTTCAAATTTAGAGAAAGTGGGGCCCCTTCACAAGCAGCTACGACAGCCCACTGTACTTTCCAGAGTCTGAAGATAAAGgggACTAATACCTTTTGAGGCTTTTAAGTTCACACACAAGTGCCAGTCGTGCAGACCTGAAACAGGCACTGACAAACACTCTAAATCATGGTTTATTACCGCTAAACTAAAGAGAACCTCAGATGACAGGTTCAGACTGTGCAGTCAGACAGAGCCTTGCCATATTGAAACAGCCCCTGCCAAACAAAATCACATAATAGTCCACATTGTTTTCCCCAGagcactgtctgtgtgtggctCAGATACCTTTGGCTCTGCTCTATTTGGGGCTTGGTGTTGTTTCAGGTACAGCTTACGTCAATGTCAGGGCTGTGTATTTCAATATGGTAAGGCTCCATATTAcccaagtaaaataaaaaataaaacgagACCAATTGCAGAGGGGATTGGTGGTGAGTTCAGTATACTGGATAAGAGCGATGTTGGAAAGTGGTGACAGATATACAGCAGATGTAGCCAAacaagagcaggagagagagtgaggtgGATCTTTGCACTGGTTTACATCTCACTGGGCTCTTCAGACCCCATGTCCAAGCAGCAGCGGCAGGCTGATGGTCTCCCTCTGGGTTCTTCCCTACTCCGTCTGGGCGTCATAGTTGGCACCTCCAGCTTTCTTCAGCTCATTCCTGATATAATCTTCTTCCAACTCCCTGGGGTCGCTAATCATGAATTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80685 lncRNA downstream 52367 25934901 ~ 25935451 (-) False AMCG00020613
TU80672 lncRNA downstream 55676 25931699 ~ 25932142 (-) True G64477
TU80665 lncRNA downstream 91952 25895152 ~ 25895866 (-) False AMCG00020614
TU80595 lncRNA downstream 272361 25714135 ~ 25715457 (-) False AMCG00020604
TU80774 lncRNA upstream 201872 26191561 ~ 26192678 (-) True G64562
TU80822 lncRNA upstream 437461 26427150 ~ 26428274 (-) True G64608
TU80843 lncRNA upstream 581813 26571502 ~ 26571716 (-) True G64625
TU80845 lncRNA upstream 645899 26635588 ~ 26635788 (-) True G64627
TU80847 lncRNA upstream 740166 26729855 ~ 26730111 (-) True G64629
AMCG00020618 mRNA downstream 16018 25966140 ~ 25971800 (-) True AMCG00020618
AMCG00020620 mRNA downstream 22511 25960378 ~ 25965307 (-) True AMCG00020620
AMCG00020613 mRNA downstream 39475 25934901 ~ 25948343 (-) True AMCG00020613
AMCG00020615 mRNA downstream 70045 25910562 ~ 25917773 (-) True AMCG00020615
AMCG00020614 mRNA downstream 82220 25886050 ~ 25905598 (-) True AMCG00020614
AMCG00020619 mRNA upstream 32053 26021742 ~ 26053728 (-) True AMCG00020619
AMCG00020622 mRNA upstream 119330 26109019 ~ 26129019 (-) True AMCG00020622
AMCG00020623 mRNA upstream 189260 26178949 ~ 26179335 (-) True AMCG00020623
AMCG00020625 mRNA upstream 210182 26199871 ~ 26216813 (-) True AMCG00020625
AMCG00020628 mRNA upstream 383097 26372786 ~ 26393051 (-) True AMCG00020628
TU80656 other downstream 69188 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 82207 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 657248 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 684837 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 711401 25274541 ~ 25276417 (-) False AMCG00020589
TU80934 other upstream 1256325 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 2236846 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 2335618 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 2798891 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 3391626 29381315 ~ 29405636 (-) True G65000

Expression Profile