RNA id: TU80769



Basic Information


Item Value
RNA id TU80769
length 255
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G64557
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26207584 ~ 26207838 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTTCAATAACTGGGTCAATTgcctttattttcatataatcaaaTGTTTCCCCTTTTTTCAGCAAGTAAATGCCTCAGGATGGTTtcttatcaatattaatatgtCCATTCCCCTCTTACCTCTTGAAATCGTCGTGGTAGAATTCAGATTTGCAGGTCAGCATCTCGTTGTTCTGAGGGTCTTCCGTCTCTCGGCTCCTCACCCCACCAAAGACATACAATTCCTGCCCAACTCCACAGGCCACAGCTCCAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU80768 lncRNA upstream 5544 26201064 ~ 26202040 (+) True G64556
TU80767 lncRNA upstream 10179 26195213 ~ 26197405 (+) True G64555
TU80711 lncRNA upstream 110663 26094663 ~ 26096921 (+) False AMCG00020621
TU80673 lncRNA upstream 267471 25934905 ~ 25940113 (+) True G64478
TU80641 lncRNA upstream 312059 25894150 ~ 25895525 (+) True G64457
TU80770 lncRNA downstream 5042 26212880 ~ 26213093 (+) True G64558
TU80771 lncRNA downstream 5539 26213377 ~ 26213728 (+) True G64559
TU80773 lncRNA downstream 8794 26216632 ~ 26217130 (+) True G64561
TU80814 lncRNA downstream 223836 26431674 ~ 26432153 (+) True G64601
TU80816 lncRNA downstream 226002 26433840 ~ 26435114 (+) True G64603
AMCG00020621 mRNA upstream 110627 26055287 ~ 26096957 (+) True AMCG00020621
AMCG00020617 mRNA upstream 178135 26016891 ~ 26029449 (+) True AMCG00020617
AMCG00020610 mRNA upstream 217897 25972533 ~ 25989687 (+) True AMCG00020610
AMCG00020611 mRNA upstream 275442 25920639 ~ 25932142 (+) True AMCG00020611
AMCG00020616 mRNA upstream 322505 25877255 ~ 25885079 (+) True AMCG00020616
AMCG00020624 mRNA downstream 12792 26220630 ~ 26230564 (+) True AMCG00020624
AMCG00020626 mRNA downstream 220088 26427926 ~ 26428763 (+) True AMCG00020626
AMCG00020629 mRNA downstream 234537 26442375 ~ 26471185 (+) True AMCG00020629
AMCG00020630 mRNA downstream 281468 26489306 ~ 26507324 (+) True AMCG00020630
AMCG00020631 mRNA downstream 683779 26891617 ~ 26904288 (+) True AMCG00020631
TU80525 other upstream 654264 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 1122830 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 1130894 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1725470 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 2151992 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1208158 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 2665792 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 2800825 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3256726 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3317877 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile