RNA id: TU80843


Basic Information

Item Value
RNA id TU80843
length 215
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G64625
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26571502 ~ 26571716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACACCTtattaaaaactacattttgaaaagtgCAATTTTCCTTCCTTAGGAGCACATGTGTCAAGTACTTTCTTATGTGACAGggttgcattttttctttcagttatcATTATACTCACATGAGGCTGTAAGATAGAACatctataataatttaaataaagagacatatacacacaaaacactttgtttttcatattttttggaAACAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80822 lncRNA downstream 143228 26427150 ~ 26428274 (-) True G64608
TU80774 lncRNA downstream 378824 26191561 ~ 26192678 (-) True G64562
TU80719 lncRNA downstream 581813 25985448 ~ 25989689 (-) False G64510
TU80718 lncRNA downstream 581813 25987818 ~ 25989689 (-) True G64510
TU80685 lncRNA downstream 636051 25934901 ~ 25935451 (-) False AMCG00020613
TU80845 lncRNA upstream 63872 26635588 ~ 26635788 (-) True G64627
TU80847 lncRNA upstream 158139 26729855 ~ 26730111 (-) True G64629
TU80848 lncRNA upstream 159719 26731435 ~ 26732288 (-) True G64630
TU80850 lncRNA upstream 173833 26745549 ~ 26745823 (-) True G64632
TU80932 lncRNA upstream 664367 27236083 ~ 27236322 (-) True G64708
AMCG00020627 mRNA downstream 129049 26415975 ~ 26442453 (-) True AMCG00020627
AMCG00020628 mRNA downstream 178451 26372786 ~ 26393051 (-) True AMCG00020628
AMCG00020625 mRNA downstream 354689 26199871 ~ 26216813 (-) True AMCG00020625
AMCG00020623 mRNA downstream 392167 26178949 ~ 26179335 (-) True AMCG00020623
AMCG00020622 mRNA downstream 442483 26109019 ~ 26129019 (-) True AMCG00020622
AMCG00020635 mRNA upstream 530685 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020639 mRNA upstream 676183 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020647 mRNA upstream 688136 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020644 mRNA upstream 709899 27281615 ~ 27286072 (-) True AMCG00020644
AMCG00020643 mRNA upstream 835239 27406955 ~ 27408112 (-) True AMCG00020643
TU80656 other downstream 652872 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 665891 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 1240932 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 1268521 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 1295085 25274541 ~ 25276417 (-) False AMCG00020589
TU80934 other upstream 674298 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 1654819 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 1753591 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 2216864 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 2809599 29381315 ~ 29405636 (-) True G65000

Expression Profile