RNA id: TU80847



Basic Information


Item Value
RNA id TU80847
length 257
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G64629
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 26729855 ~ 26730111 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGCTATGGATATAAgaagctttttcaaaaagaaaaaggatcatGAAGGCAAGGAAGTACAGGTGAGGCTAGTGGAGgtggaggacgaggacgagTTATCTCCTGTAGCTGTAGCAACAGATGAGTCAGGACGTGAGTGTGCCACTGCCTCATCTAACATTACAAGCTCAGGTTGGTGAAGAAGAGGGCTctttagctagctagctagtcTAGCTTAGTGgctctcaatttttttttgtcacaagGCACACCATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU80845 lncRNA downstream 94067 26635588 ~ 26635788 (-) True G64627
TU80843 lncRNA downstream 158139 26571502 ~ 26571716 (-) True G64625
TU80822 lncRNA downstream 301581 26427150 ~ 26428274 (-) True G64608
TU80774 lncRNA downstream 537177 26191561 ~ 26192678 (-) True G64562
TU80719 lncRNA downstream 740166 25985448 ~ 25989689 (-) False G64510
TU80848 lncRNA upstream 1324 26731435 ~ 26732288 (-) True G64630
TU80850 lncRNA upstream 15438 26745549 ~ 26745823 (-) True G64632
TU80932 lncRNA upstream 505972 27236083 ~ 27236322 (-) True G64708
TU80977 lncRNA upstream 690255 27420366 ~ 27420646 (-) True G64745
TU81054 lncRNA upstream 1431491 28161602 ~ 28187431 (-) False AMCG00020657
AMCG00020627 mRNA downstream 287402 26415975 ~ 26442453 (-) True AMCG00020627
AMCG00020628 mRNA downstream 336804 26372786 ~ 26393051 (-) True AMCG00020628
AMCG00020625 mRNA downstream 513042 26199871 ~ 26216813 (-) True AMCG00020625
AMCG00020623 mRNA downstream 550520 26178949 ~ 26179335 (-) True AMCG00020623
AMCG00020622 mRNA downstream 600836 26109019 ~ 26129019 (-) True AMCG00020622
AMCG00020635 mRNA upstream 372290 27102401 ~ 27108280 (-) True AMCG00020635
AMCG00020639 mRNA upstream 517788 27247899 ~ 27248945 (-) False AMCG00020639
AMCG00020647 mRNA upstream 529741 27259852 ~ 27269443 (-) True AMCG00020647
AMCG00020644 mRNA upstream 551504 27281615 ~ 27286072 (-) True AMCG00020644
AMCG00020643 mRNA upstream 676844 27406955 ~ 27408112 (-) True AMCG00020643
TU80656 other downstream 811225 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 824244 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 1399285 25330084 ~ 25330570 (-) True G64298
TU80419 other downstream 1426874 25298802 ~ 25302981 (-) False AMCG00020590
TU80414 other downstream 1453438 25274541 ~ 25276417 (-) False AMCG00020589
TU80934 other upstream 515903 27246014 ~ 27249676 (-) True AMCG00020639
TU81066 other upstream 1496424 28226535 ~ 28229647 (-) True G64811
TU81116 other upstream 1595196 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 2058469 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 2651204 29381315 ~ 29405636 (-) True G65000

Expression Profile