RNA id: TU81115


Basic Information

Item Value
RNA id TU81115
length 1634
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G64847
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 28316769 ~ 28323164 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACATTAGCAGCACATCGTTTTGAAGCTCAGATTTCAGCCATTGAAATGTCTCCAGGTACAAGTGATCCCCCTTGTTGATAAACTTCACTTTCTGGATACAGCACAAAATTAAAGGTTTcaaatctttgtttttattgttaaatgtacatctttaataaagcaaatagtttttgttttgtgtgtttttcttacagaagcttttaaaatgtaaaatacaaaatgtacaattccagtttcaaaaaaaacattttactccCCACATAAAGCAAATGCATCTAGAGCAAAGTTAGCCTGAGCTATTGTACAAACCTTCAGCACTTGGCAGTTTGTGCAAAAGAATGTCGATGGCAACACTTGTCTGACCAAGTGTAATGTAAGAtccaaggagaaaaaaaaaccatgAGAACATAACCAGctttataaagttttttttctttttctttttttcagtatATAATAACACAGCACCTATGTAATGACTCAAAAAATGGTTTGAAGTCTACTCTTCCAATTTCACATTCCTTCATCTGCTGCAGAACACCCAGTCCGGACGTCTGCAGCGGTTTCTGGTTTTGGTTCCACCTCAGCTCATAGGTTCTGATATCAGACTAATCATTCGCTCGAGAGGACCAACCagaaacctatttttttttgtgtgtattttttgttcttttctggGGCCTGAGTTGTGGACCAGTTTTGAAAACTCTTAGGAAGGGATGGGTACAAACGGGACGGCAGCCGTTGTATGTGTAATGGTAACCGCCCAGCGACGGACAGTTTCACGTAGTGTTGATTCATTTATGATATGCTTTTTTGTAGGTTTGATTTTTCTCCCCAACTTCAAAGAGAAAGAAGTGAAGAATCTCACTGTTTCGGAACTATTGAAGACCGTGGTTATCTAGTTCCCAGTTGTGGGCACTTCAGCACCATATTAAACATCTGCACCTACACCACTGCTTCAGCCAACCAGGTCCATTCAACTCTGATTGTCAAGCAgttgcaaatacatttgttgcaGGTTGAGCATTTTCACATGGTTGTTGGGTTTCTTTAAGGGACTGGGAATTGTTCCACAGTTAGCCCAtctatttattgtgttttaatcacATCTTCTTGACTTTCTCACTTGAAGATTAGTGGTGTAGACTGTCTGCAATTCTGCATGACTTTGAATAACAGGGTTTGTGGGAATTATTCTCACACTCTCTTCCACGGGCAGAATTTTACTTTCAAAGCGATTTCTCCAAATATGCCCATATATTCTGACCACTCGTTTATATTCAAAACAGGGGATGTAAACTTGCTTCAAAGCAACTGccttcggggggggggggatctaataaaatcaaatgaaccATCTTAATGAGATTATAAAAGCACAATTaatgatgtttttaattgaacatgCTTAAACTTAGGAATATACTGTTGCCGGCTCGATAGACTATCACCGCTAACCACATCTCTCTGTCCCATCCCTGTCCTTCCCTTCATATGGATTTCATCAGGGttaaacattttgtgttgttctcTTTTAGTAGTAGCAACTGGTTAACCATGGTTCACATGGTTGAAAATGCTAATAGTTACAGTTCAAGgtctttatatatgtataattcatatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81049 lncRNA downstream 77695 28185609 ~ 28239074 (-) False AMCG00020657
TU81054 lncRNA downstream 129338 28161602 ~ 28187431 (-) False AMCG00020657
TU81047 lncRNA downstream 129338 28185609 ~ 28187431 (-) False AMCG00020657
TU80977 lncRNA downstream 896123 27420366 ~ 27420646 (-) True G64745
TU80932 lncRNA downstream 1080447 27236083 ~ 27236322 (-) True G64708
TU81159 lncRNA upstream 534825 28857989 ~ 28858354 (-) True G64886
TU81188 lncRNA upstream 673228 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA upstream 673228 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA upstream 673253 28996417 ~ 28999532 (-) False G64912
TU81290 lncRNA upstream 936393 29259557 ~ 29314059 (-) True G64991
AMCG00020659 mRNA downstream 51578 28250873 ~ 28265191 (-) True AMCG00020659
AMCG00020657 mRNA downstream 125035 28178721 ~ 28191734 (-) True AMCG00020657
AMCG00020658 mRNA downstream 168922 28137230 ~ 28147847 (-) True AMCG00020658
AMCG00020653 mRNA downstream 281360 27863475 ~ 28035409 (-) True AMCG00020653
AMCG00020652 mRNA downstream 459151 27795256 ~ 27857618 (-) True AMCG00020652
AMCG00020661 mRNA upstream 1873 28325037 ~ 28328300 (-) True AMCG00020661
AMCG00020662 mRNA upstream 5821 28328985 ~ 28342177 (-) True AMCG00020662
AMCG00020664 mRNA upstream 108615 28431779 ~ 28450361 (-) True AMCG00020664
AMCG00020666 mRNA upstream 158318 28481482 ~ 28487871 (-) True AMCG00020666
AMCG00020669 mRNA upstream 481037 28804201 ~ 28804674 (-) True AMCG00020669
TU81066 other downstream 87122 28226535 ~ 28229647 (-) True G64811
TU80934 other downstream 1067093 27246014 ~ 27249676 (-) True AMCG00020639
TU80656 other downstream 2398139 25898428 ~ 25918630 (-) False G64470
TU80657 other downstream 2411158 25898428 ~ 25905611 (-) True G64470
TU80433 other downstream 2986199 25330084 ~ 25330570 (-) True G64298
TU81116 other upstream 2143 28325307 ~ 28328312 (-) False AMCG00020661
TU81155 other upstream 465416 28788580 ~ 28796956 (-) True G64882
TU81300 other upstream 1058151 29381315 ~ 29405636 (-) True G65000
TU81316 other upstream 1206755 29529919 ~ 29533117 (-) False AMCG00020685
TU81356 other upstream 2199822 30522986 ~ 30531136 (-) True AMCG00020694

Expression Profile