RNA id: TU81342


Basic Information

Item Value
RNA id TU81342
length 253
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G65033
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 29983113 ~ 29983365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAATATCAACCCTTACATACATTTGAGCAAAATTCATCAATGTGACTGTGTGCTAAAGTAAGTTAGTAGTCCCAGACCCTTTTAAAATAACCTTAACAGATTAAATTTGATTCTAATGCTAAAAACCTGTCCAATTCGGTTTTCTTAACGTACAAACAGCTAAACAGTTTAAGCCTGTTTATGAAGTGAATGCATTAATTCagacaaattaatacataatacattgtacatatCAGCAGAGAATGGCTTTCC

Function

GO:

id name namespace
GO:0030123 AP-3 adaptor complex cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81330 lncRNA downstream 97214 29885601 ~ 29885899 (-) True G65023
TU81290 lncRNA downstream 669054 29259557 ~ 29314059 (-) True G64991
TU81188 lncRNA downstream 981480 28996392 ~ 29001633 (-) True G64912
TU81189 lncRNA downstream 983581 28996392 ~ 28999532 (-) False G64912
TU81187 lncRNA downstream 983581 28996417 ~ 28999532 (-) False G64912
TU81344 lncRNA upstream 143324 30126689 ~ 30390868 (-) True G65035
TU81361 lncRNA upstream 551927 30535292 ~ 30535896 (-) True G65050
TU81372 lncRNA upstream 633515 30616880 ~ 30617134 (-) True G65061
TU81379 lncRNA upstream 689380 30672745 ~ 30672962 (-) True G65068
TU81382 lncRNA upstream 709783 30693148 ~ 30693367 (-) True G65071
AMCG00020685 mRNA downstream 450026 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020686 mRNA downstream 478701 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020680 mRNA downstream 515092 29464875 ~ 29468021 (-) True AMCG00020680
AMCG00020682 mRNA downstream 525462 29418816 ~ 29457651 (-) True AMCG00020682
AMCG00020681 mRNA downstream 614717 29336704 ~ 29368396 (-) True AMCG00020681
AMCG00020692 mRNA upstream 144854 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020693 mRNA upstream 381655 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020694 mRNA upstream 466380 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020700 mRNA upstream 739418 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020699 mRNA upstream 774761 30758126 ~ 30760083 (-) True AMCG00020699
TU81316 other downstream 449996 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 577477 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 1186157 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 1654801 28325307 ~ 28328312 (-) False AMCG00020661
TU81066 other downstream 1753466 28226535 ~ 28229647 (-) True G64811
TU81356 other upstream 539621 30522986 ~ 30531136 (-) True AMCG00020694
TU81423 other upstream 819869 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 2377870 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 2624497 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 2671769 32655134 ~ 32657019 (-) True G65641

Expression Profile