RNA id: TU81372


Basic Information

Item Value
RNA id TU81372
length 255
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G65061
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30616880 ~ 30617134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGCCCTAGTGAATGCTCAACTCGTGAACTgctggctgatatattttaacaacaatatgtacgctaacctaatataaatgATACTGGATGGCATTACCTTTGCCCTTCTATTGGATATACCCgtctggaataagctgtttctcactggtgagtgcattttctcattttaaaaattaaaggaacacagcccatctttctgttacgtgtaaaactttaaactaatgccaaatgtatcatgcatggaaacacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81361 lncRNA downstream 80984 30535292 ~ 30535896 (-) True G65050
TU81344 lncRNA downstream 226012 30126689 ~ 30390868 (-) True G65035
TU81342 lncRNA downstream 633515 29983113 ~ 29983365 (-) True G65033
TU81330 lncRNA downstream 730981 29885601 ~ 29885899 (-) True G65023
TU81290 lncRNA downstream 1302821 29259557 ~ 29314059 (-) True G64991
TU81379 lncRNA upstream 55611 30672745 ~ 30672962 (-) True G65068
TU81382 lncRNA upstream 76014 30693148 ~ 30693367 (-) True G65071
TU81384 lncRNA upstream 83352 30700486 ~ 30702173 (-) True G65073
TU81391 lncRNA upstream 113716 30730850 ~ 30737935 (-) False AMCG00020700
TU81392 lncRNA upstream 113716 30730850 ~ 30737935 (-) True AMCG00020700
AMCG00020694 mRNA downstream 86060 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020693 mRNA downstream 196246 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020692 mRNA downstream 471353 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020685 mRNA downstream 1083793 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020686 mRNA downstream 1112468 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020700 mRNA upstream 105649 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020699 mRNA upstream 140992 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020702 mRNA upstream 183448 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020706 mRNA upstream 522559 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020705 mRNA upstream 528953 31146087 ~ 31151972 (-) True AMCG00020705
TU81356 other downstream 85744 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1083763 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1211244 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 1819924 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 2288568 28325307 ~ 28328312 (-) False AMCG00020661
TU81423 other upstream 186100 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 1744101 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1990728 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 2038000 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 2269230 32886364 ~ 32891493 (-) True G65679

Expression Profile