RNA id: TU81378


Basic Information

Item Value
RNA id TU81378
length 1704
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G65067
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30700454 ~ 30702157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgttaaaacattatattttcaggatatacatttttgtattgccaTAGTAATGTTAGAATCCttgcacaatttatttttttatttgattcaaaattaattttcaattagTATGTAAGCTGGTGTCTGTGCCAATAGTTTTCACtttcaggaaataaaaaggaaaaaaaagtttgctttaGTATTGGCAAATATTATGACTGACATGTCTCTGAGTACATTGGCACGCTTTCTTTtgaactgacttttttttttgtaataagcCCAGTCATATTCTTTCTGATTCATTTTGTTGTGATAAATTTTTCCCGACAATGCTTACAAGAGATTAAATTGATAGATCACTTCATCAACACAAGGTCTCAgattattaattcaattcagaTTTGACTCAAGcagtctatgtgtgtgtgtcaaagtgCATCTCTAATTTCAGAAGGttgaaaaacatgtaaacagtTTGTGTTACActtgggctgggattaaatcaaaagtttgacccacctgctaatagctaATTCCAAACCTGTACTCAGCTGCAGGTTTTTGTCagagactttttatttttttgtacgtACCAAAATCCTGCCATTACACACTGAGTTGCAGTTGTGTGGGAgcgtcaaagttttgatttgatcccaGCCTTAGTCTGAATCAATAAAGAACAGTGCGTGTCTTATATGTAACTCTATATGTAAACAATAGCAGCACCAGTTCTACAAACAGCTTTCAcagcttaattattttgtgaaggatgttttatttttcattttggacAAGCACTTTGACTGAATGTCGCAAGCAAGGATTTTAATTccatgaaatacaatacatttaaaataatttacagttgAATAGGAATAATAGGCCCTGTATTTCGTTGTGTTTGTTCTTAGTTTTTTCCCTTAATTTTCCCCCTGGTTACACTTCCTTTGGCATGCTGATGTGAAAAAGTATCTGGAGTAGACAGGAGACGGGTAGACACTAAGAGCAGAGCTTGTTTGTCCCTCTGCTGCTGTTCTTTTAGATTGGCTAAGCAGTTATAAGTCACTTTTTGGCATTTTTCGAGGAACGTATTCAGAAAACGttgtgcattgattttttttttttttcccattttgaaatagtttttagcttaactcttttctttttccaaataTGTAAAGgcttattataaaaaaagatgaagcaaagtaccaaaaaaaaaaaaaaattgataccAATAACATGAGTGTTACATAACACTGTCTATGTTGGCTGAACGTCAGTTTTCATTCTGCTCACCTGTACATACTCCTGACCTGTTGGTTTGTTAATGAAGGTGTCAATCATCGGTAATCTAGGATCGCAATGTGTggggaagaaacaaaaaacacaaaacgcGAAGAGTAAAAAGTTATATCTGATATAAAGTACCTCTGTGGagggtttttatttaataatctaAGGGTAGAGGCACCCTGTATCACagtgttgtatatatttttgtgatatttaaaccaaccttttttttcccctctgtgatGAACACTGTCTCAATCAAAGTGTGTACAGTATGTTAGTTGATGCTCCTGTAACTAGTCTATGAACACATTTCTGGGTGCCTTAGAAGTTGTATTTTTcatgtgtgttaaaaaaagaaaagaaaaaaaaaagatgcagtatTTATACCTTGTGACGAAAGCTGCTTTGAATAAAACtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81377 lncRNA upstream 200 30696959 ~ 30700254 (+) False AMCG00020695
TU81374 lncRNA upstream 51090 30648824 ~ 30649364 (+) True G65063
TU81357 lncRNA upstream 163890 30533193 ~ 30536564 (+) True AMCG00020697
TU81332 lncRNA upstream 712326 29986565 ~ 29988128 (+) True G65024
TU81333 lncRNA upstream 712395 29986565 ~ 29988059 (+) False G65024
TU81491 lncRNA downstream 443930 31146087 ~ 31149761 (+) True G65163
TU81557 lncRNA downstream 781335 31483492 ~ 31484470 (+) False AMCG00020715
TU81558 lncRNA downstream 781335 31483492 ~ 31483922 (+) False AMCG00020715
TU81570 lncRNA downstream 783426 31485583 ~ 31485902 (+) True G65223
TU81596 lncRNA downstream 862676 31564833 ~ 31566359 (+) True G65246
AMCG00020695 mRNA upstream 518 30686706 ~ 30699936 (+) True AMCG00020695
AMCG00020697 mRNA upstream 163893 30533193 ~ 30536561 (+) False AMCG00020697
AMCG00020691 mRNA upstream 714411 29985078 ~ 29986043 (+) True AMCG00020691
AMCG00020690 mRNA upstream 849899 29641654 ~ 29850555 (+) True AMCG00020690
AMCG00020689 mRNA upstream 1122759 29575351 ~ 29577695 (+) True AMCG00020689
AMCG00020698 mRNA downstream 37966 30740123 ~ 30746587 (+) True AMCG00020698
AMCG00020696 mRNA downstream 45681 30747838 ~ 30756319 (+) True AMCG00020696
AMCG00020701 mRNA downstream 59802 30761959 ~ 30803517 (+) True AMCG00020701
AMCG00020703 mRNA downstream 133415 30835572 ~ 30838031 (+) True AMCG00020703
AMCG00020704 mRNA downstream 406867 31109024 ~ 31131389 (+) True AMCG00020704
TU81277 other upstream 1125108 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 1234742 29464564 ~ 29465712 (+) True G64979
TU81182 other upstream 1690853 29008663 ~ 29009601 (+) True G64908
TU81160 other upstream 1826382 28873630 ~ 28874072 (+) True G64887
TU80958 other upstream 3281934 27415996 ~ 27418520 (+) True G64730
TU81412 other downstream 64867 30767024 ~ 30770927 (+) True G65100
TU81504 other downstream 460444 31162601 ~ 31217840 (+) True AMCG00020708
TU81555 other downstream 757345 31459502 ~ 31484470 (+) True AMCG00020715
TU81717 other downstream 1161226 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 1391867 32094024 ~ 32095186 (+) True AMCG00020742

Expression Profile