RNA id: TU81379


Basic Information

Item Value
RNA id TU81379
length 218
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G65068
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30672745 ~ 30672962 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGGGGTTAGTGCATTGTTGTCAGATGTTTGGCTTGATAGCAGTATGTGTGTGAAACCGTCTTCTTTCCTAACCACAATGTCCCTGAATCGACAGTTGCTTTCATTCTGCCGAACGTTGTATCTGAGTCTCTTGTCAAACACATAGCCTTTCTCTTCCACCAGTTTCCGTTTCATTGAACTGTGCAAATTAATTCCACCATTAGAAAGTGTGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81372 lncRNA downstream 55611 30616880 ~ 30617134 (-) True G65061
TU81361 lncRNA downstream 136849 30535292 ~ 30535896 (-) True G65050
TU81344 lncRNA downstream 281877 30126689 ~ 30390868 (-) True G65035
TU81342 lncRNA downstream 689380 29983113 ~ 29983365 (-) True G65033
TU81330 lncRNA downstream 786846 29885601 ~ 29885899 (-) True G65023
TU81382 lncRNA upstream 20186 30693148 ~ 30693367 (-) True G65071
TU81384 lncRNA upstream 27524 30700486 ~ 30702173 (-) True G65073
TU81391 lncRNA upstream 57888 30730850 ~ 30737935 (-) False AMCG00020700
TU81392 lncRNA upstream 57888 30730850 ~ 30737935 (-) True AMCG00020700
TU81427 lncRNA upstream 157219 30830181 ~ 30830542 (-) True G65109
AMCG00020694 mRNA downstream 141925 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020693 mRNA downstream 252111 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020692 mRNA downstream 527218 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020685 mRNA downstream 1139658 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020686 mRNA downstream 1168333 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020700 mRNA upstream 49821 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020699 mRNA upstream 85164 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020702 mRNA upstream 127620 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020706 mRNA upstream 466731 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020705 mRNA upstream 473125 31146087 ~ 31151972 (-) True AMCG00020705
TU81356 other downstream 141609 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1139628 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1267109 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 1875789 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 2344433 28325307 ~ 28328312 (-) False AMCG00020661
TU81423 other upstream 130272 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 1688273 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1934900 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1982172 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 2213402 32886364 ~ 32891493 (-) True G65679

Expression Profile