RNA id: TU81384


Basic Information

Item Value
RNA id TU81384
length 1688
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G65073
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 30700486 ~ 30702173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttaaattaattccataGTTTTATTCAAAGCAGCTTTCGTCACAAGGTATAAatactgcatcttttttttttcttttctttttttaacacacatgAAAAATACAACTTCTAAGGCACCCAGAAATGTGTTCATAGACTAGTTACAGGAGCATCAACTAACATACTGTACACACTTTGATTGAGACAGTGTTCatcacagaggggaaaaaaaaggttggtttaaatatcacaaaaatatatacaacactGTGATACAGGGTGCCTCTACCCTtagattattaaataaaaaccctCCACAGAGGTACTTTATATCAGATATAACTTTTTACTCTTCgcgttttgtgttttttgtttcttccccACACATTGCGATCCTAGATTACCGATGATTGACACCTTCATTAACAAACCAACAGGTCAGGAGTATGTACAGGTGAGCAGAATGAAAACTGACGTTCAGCCAACATAGACAGTGTTATGTAACACTCATGTTATTggtatcaatttttttttttttttggtactttgcttcatctttttttataataagcCTTTACAtatttggaaaaagaaaagagttaagctaaaaactatttcaaaatgggaaaaaaaaaaaaaatcaatgcacaaCGTTTTCTGAATACGTTCCTCGAAAAATGCCAAAAAGTGACTTATAACTGCTTAGCCAATCTAAAAGAACAGCAGCAGAGGGACAAACAAGCTCTGCTCTTAGTGTCTACCCGTCTCCTGTCTACTCCAGATACTTTTTCACATCAGCATGCCAAAGGAAGTGTAACCAGGGGGAAAATTAAGGGAAAAAACTAAGAACAAACACAACGAAATACAGGGCCTATTATTCCTATTcaactgtaaattattttaaatgtattgtatttcatggAATTAAAATCCTTGCTTGCGACATTCAGTCAAAGTGCTTgtccaaaatgaaaaataaaacatccttcacaaaataattaagctgTGAAAGCTGTTTGTAGAACTGGTGCTGCTATTGTTTACATATAGAGTTACATATAAGACACGCACTGTTCTTTATTGATTCAGACTAAGGCtgggatcaaatcaaaactttgacgcTCCCACACAACTGCAACTCAGTGTGTAATGGCAGGATTTTGGTacgtacaaaaaaataaaaagtctctGACAAAAACCTGCAGCTGAGTACAGGTTTGGAATtagctattagcaggtgggtcaaacttttgatttaatcccagcccaagTGTAACACAAactgtttacatgtttttcaaCCTTCTGAAATTAGAGATGcactttgacacacacacatagactgCTTGAGTCAAAtctgaattgaattaataatcTGAGACCTTGTGTTGATGAAGTGATCTATCAATTTAATCTCTTGTAAGCATTGTCGGGAAAAATTTATCACAACAAAATGAATCAGAAAGAATATGACTGGgcttattacaaaaaaaaaagtcagttcaAAAGAAAGCGTGCCAATGTACTCAGAGACATGTCAGTCATAATATTTGCCAATACtaaagcaaacttttttttcctttttatttcctgaaaGTGAAAACTATTGGCACAGACACCAGCTTACATActaattgaaaattaattttgaatcaaataaaaaaataaattgtgcaaGGATTCTAACATTACTAtggcaatacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81382 lncRNA downstream 7119 30693148 ~ 30693367 (-) True G65071
TU81379 lncRNA downstream 27524 30672745 ~ 30672962 (-) True G65068
TU81372 lncRNA downstream 83352 30616880 ~ 30617134 (-) True G65061
TU81361 lncRNA downstream 164590 30535292 ~ 30535896 (-) True G65050
TU81344 lncRNA downstream 309618 30126689 ~ 30390868 (-) True G65035
TU81391 lncRNA upstream 28677 30730850 ~ 30737935 (-) False AMCG00020700
TU81392 lncRNA upstream 28677 30730850 ~ 30737935 (-) True AMCG00020700
TU81427 lncRNA upstream 128008 30830181 ~ 30830542 (-) True G65109
TU81496 lncRNA upstream 450246 31152419 ~ 31156265 (-) True G65166
TU81516 lncRNA upstream 510765 31212938 ~ 31217885 (-) True G65178
AMCG00020694 mRNA downstream 169666 30449745 ~ 30530820 (-) False AMCG00020694
AMCG00020693 mRNA downstream 279852 30365020 ~ 30420634 (-) True AMCG00020693
AMCG00020692 mRNA downstream 554959 30128219 ~ 30145527 (-) True AMCG00020692
AMCG00020685 mRNA downstream 1167399 29520191 ~ 29533087 (-) True AMCG00020685
AMCG00020686 mRNA downstream 1196074 29487288 ~ 29504412 (-) True AMCG00020686
AMCG00020700 mRNA upstream 20610 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020699 mRNA upstream 55953 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020702 mRNA upstream 98409 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020706 mRNA upstream 437520 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020705 mRNA upstream 443914 31146087 ~ 31151972 (-) True AMCG00020705
TU81356 other downstream 169350 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1167369 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1294850 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 1903530 28788580 ~ 28796956 (-) True G64882
TU81116 other downstream 2372174 28325307 ~ 28328312 (-) False AMCG00020661
TU81423 other upstream 101061 30803234 ~ 30808846 (-) False AMCG00020702
TU81960 other upstream 1659062 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1905689 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1952961 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 2184191 32886364 ~ 32891493 (-) True G65679

Expression Profile