RNA id: TU81491


Basic Information

Item Value
RNA id TU81491
length 2674
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G65163
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31146087 ~ 31149761 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGTGCTCATAAACTTTATTGCAGAACACAGTAAATTCTTATTGACAGATTGGGCTCTATCAGTTAATATATAAATGGGGAAAGTACCACATTACAGTTACaccaaatgcattatttatcatAGTAACAATCAATGTAGTCTTAAagagctttaaaaatattaatttctacagctggctatttaaaataaaatgtaaaaaacctAGATTTGAGAATTTACAAGAAACATCCTTGAAAATAGGTCCATTTAGAGAACAAATTTCATAATTCCAGCTTGGAAGATCTCATAtgaatcattttcatttcaaatgggGAAGCCTACCAACTATCAAAATATTGAAACCCTCCCTTCACCAGgtctacaaaataataacacattttataagatTTATAAGATAATTTGGTCAATGTAAACTAAATCCCTTTATGAAATGCAACACTgaaaaaaattatgaattaaCCATATAGTACTAATCTAATGCATTtccagttaaaaacaaattacaatctataattaatctttaaaatagcCAGTATGTTGGACCTCATGGCTCCATTGAATATAGTAATATAACTCAGAAACAATGAAGTTATCAAACAAAGGCTAAAAGTCACATTTTACAAGGCatcaacaatttaaaaaaggtagAAATTGAAATGTTTGGGAAATTCTGCTCTGTCATTCACACGCCTAAAGCAGTAGCAGGAAAAATCTTGTGGACTGTCCCATTATTTTGGAGCTAGTCAGACCTcgaaatgtttgtttctttatctggTGTTGGCCAAGCACCCACTAAATTAATCTGGGAAAAATGAAGTGTAAATATTTAGGactacaattatatttttctctggTTAGTAAGTCACAGGTAGATGTTTACATCAAATGACTGAAGTGGTactgtttttaaagtatatacaaatattattaggaaaaaaaagtcataaaataGGATTAGCTGTATAACTAGAATTTCTGGAATTTCATGAGTGGAACCACATATTGACCAATAAAAGGCAACAGTCCAGGCTGTGAACACAAAAGATAATTGATTATTTACCTAAATTGTAGAtcagaaaaatatacaacaatTGTATAATCTTTATTTATAATGGTAGGAGTTAATATCAAACATTACAGTGGAGTTTCTGAATCTTCAGTAATTCCCATTAGAAaggcaaaatacacaaaaagtgacactttttctctctctaatcCCTGCCTTAATCTTAATCTAAAATTTACTCTGGCGACTCCATCTAATTTAACATTCTCAACCAACAGTGGAAAACACATTAACTTCAAGATAAGATATTTCAAGGTGTTCTTTAACAAGgagagaaaatgtgaaaagcaaGTTAAAAGCAATTGTTAACAGAATGTGTGTTGTGCAGACTAATgcatttacagaaatgcaaaaaacGCCAAAACATTTAAGACTCTTGTGAATGTACAAAGCACTATTCTCAAGCTTACGGTTAAGgttaaaaggagaaaaagatAACTCTCTATAATTAAATCAGTCATGAGATCACACTCCCAAGGAACATGTACACGTCCCCACTTCTGTCTATACAGTTTTACTACAATTTACACTAACTATAAACCTTAATTGTATCCTCCAATAGACCAAGATTTGAGCATAAACTGTTGAACAAGACAAAAAGAATAATCTCAAAaacatcagttttatttaaagactCAAAATAGATGGTTATAAAACAAGAAGCATAACtaacgaacaaacaaacagcatttaCATGCCAAGAACTCAAGAgcaaaattaacttaatttgcCATGTAATGCATCTTCATATCATCTTTCAAACCATCGTTCAATCCTCAGATAGGACAACTGAcatattcatgtaaaatatgCACAAAGACTTACTAACTCTAACCTGCCATACCTAAAATTAGACAGAAAGCACTTCAGAATTTCTCTTGGGGGTTGTGGATGTAAGCAGAGACTTCTCTGTGAATATAAACGTAGGGAGACTCGCACTACACACTTAAAGACagattttaaattcagaaatcaCATTACTCTACTCAAACCTCAAAAGTACCTatctgtaaaaatgtatatcagcaaaataacattattttcaattagtAAATCCTCTTAAATATGTCAATTTCACAACTACTGTATTAGCTAAAATCAGCACTAACCTGCAGACATTTGTGTACATTGGTAGTAACTTTTATCCTACAGTAAGACACATAGCCATGAGTAGTTGCAGGTTCAGATAGCTGTGGTTCTCAGCAAATGAactgcagtgtatatagttatttGACACAAACCGTTGTCAACAGGGATTTTTGAGAAGACATCTGAAAAAACTTTCCACTAGACTTATTTTCTGGCAATGTTCAGCTTGTCCTACAGAAATGGAGTTTAGTCAGCAACATCTCTGCAGAGAAGACCCTTCTGAGCAGTtcactggggggtggggggggtatcNNAGTCCCGTTTGGCAGACATGGCTGAGGAGAGCTAGTTCCAGGTCGGCTTAGCACAGGTGCAGGACGGCTTTGTTGATCTCCGGATTAGTCCAGTCATTCCTCAGGTCATCCAGGTGATTGTCAAAGTCTGTGAGGTTGTCATAGGACCTGCTTTCCAGGAGGGCGGACGTGATCTTTTGGGCTTCTAACCAGTCCTCACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81378 lncRNA upstream 443930 30700454 ~ 30702157 (+) True G65067
TU81377 lncRNA upstream 445833 30696959 ~ 30700254 (+) False AMCG00020695
TU81374 lncRNA upstream 496723 30648824 ~ 30649364 (+) True G65063
TU81357 lncRNA upstream 609523 30533193 ~ 30536564 (+) True AMCG00020697
TU81332 lncRNA upstream 1157959 29986565 ~ 29988128 (+) True G65024
TU81557 lncRNA downstream 333731 31483492 ~ 31484470 (+) False AMCG00020715
TU81558 lncRNA downstream 333731 31483492 ~ 31483922 (+) False AMCG00020715
TU81570 lncRNA downstream 335822 31485583 ~ 31485902 (+) True G65223
TU81596 lncRNA downstream 415072 31564833 ~ 31566359 (+) True G65246
TU81619 lncRNA downstream 486002 31635763 ~ 31636329 (+) True G65266
AMCG00020704 mRNA upstream 14698 31109024 ~ 31131389 (+) True AMCG00020704
AMCG00020703 mRNA upstream 308056 30835572 ~ 30838031 (+) True AMCG00020703
AMCG00020701 mRNA upstream 342570 30761959 ~ 30803517 (+) True AMCG00020701
AMCG00020696 mRNA upstream 389768 30747838 ~ 30756319 (+) True AMCG00020696
AMCG00020698 mRNA upstream 399500 30740123 ~ 30746587 (+) True AMCG00020698
AMCG00020707 mRNA downstream 2640 31152401 ~ 31155839 (+) True AMCG00020707
AMCG00020708 mRNA downstream 52189 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020709 mRNA downstream 77361 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020710 mRNA downstream 263764 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020715 mRNA downstream 310553 31460314 ~ 31483706 (+) False AMCG00020715
TU81412 other upstream 375160 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 1570741 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 1680375 29464564 ~ 29465712 (+) True G64979
TU81182 other upstream 2136486 29008663 ~ 29009601 (+) True G64908
TU81160 other upstream 2272015 28873630 ~ 28874072 (+) True G64887
TU81504 other downstream 12840 31162601 ~ 31217840 (+) True AMCG00020708
TU81555 other downstream 309741 31459502 ~ 31484470 (+) True AMCG00020715
TU81717 other downstream 713622 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 944263 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 1036853 32186614 ~ 32189381 (+) True G65433

Expression Profile