RNA id: TU81496


Basic Information

Item Value
RNA id TU81496
length 3525
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G65166
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31152419 ~ 31156265 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATTATTAAGGATCCCAACCGCATAAACAATGGTTTCTTCTCAGTGCTGTGGTCTttgatcttgtttttgttgtctttcttttattgttgtatACTGAGTTTTATATTGGTTAATGCAGTTAAGGAGGCTCACAGAAAAAGGATTTCAAGTGAGAGAATAAGTACACCTTAAGTATTAAGAATGtactaaaattaaatgtttaaaggttTGGGTAAAAGCCTAATTACACGTTTCAGATGtagtagtttttttattatatataatatatatatatatatatatatatatatatataaacacacacaccaaagaTGCTTATATAAATGGACTGTAATCAGAAAAAAGGCAAGACAACCCATATGATTATATGTATACTATTGCACTGTCCTCTGTAGTTGCAATTACTGCCACAAAAGAAGCAGAGTCTTTTCAGTAAACCATTGGAGCTTTATTATcgttaaaatgtacacattaacCTTAAGAGGAAGTCTTCTTCCAGAATGCATTTACTGAGGTAACATTGTGAAATGACAGTAAGATTGTTTGTAAGTAAGAGTTGACTGGCCCATGAGATGGTTCATTTCTTCCACTGTTTGTTCTCGTAGTCCCATTTGGCTGAAAAGCCTTCGACTGGGTTGATCCTCATGTCCAGCATTCTCTGCAGCTGAGCCGCTTGGTATTCCTCAGAGAGGGTGTGAGGAACATCACcgtacactgcacacacaattGAAAACACAACGGTAACCTCAAGAATATAATACAAAGTTTCCTGCTAGCACAAAGATTTAAGGTACCAAGTAGAGCCTTAATTGGTCATTTGTCCCAATAAACCTTAGTGggagacattttcattttttatccaCCATGCTGACAGAGGAACAGTAGAATGACTAGCTCGTATAGATAAAAGAAAGCTAAAACAGGGCTCTGCTAAttctaattataaaatattaacaaaatatcttGTATATCTTATTCCAAAACAGAAGACCGTAACACATCGATTGTAGATCAAGATGTATGTTTCTTACTAGCCGAGTTATTGGAACAGATATACTCAACTAAGCCAACACTTTAAAGAGCAACAATTAAGAAGGAAAGGGGGGAAATCACTACAATCCTAAATGGACTTTTACATCATGTAGTTTTACTTGCAGACTTAATTAGAAAAGCCTTTTGTACCTAATAAAGGTTAATCTTTTTCATTGTCCAGTCACAGTACAAGCTGTGTTATCCTATGCCTATTTAAGTATTACAGTACCACTGCTCATCTAGGAAGTAAAtgtttgcaatatttatatCAATTTAATCTTCAAATGATAGacacataatataaaatgttaacaatTGAACATGCTCCTTGCTAATAAGGATTCAAGGCACACGACTCCATCAGCAAGTTGCTGCTCATTGCAGTGGAGTTCAATTTCCAAAGAAAGTCATGCTTTGTGACTAAAAAAAATACCTAAagtttaaacatgcattttcactattgtattacattttattaggCAGATACACTATGGGCATCATTAATAAATACCCTTTTATATCTGAACACTCAGTTTACTGTTGTACAGACAATTAGAAACAGGAGGTGAAACATGCAAAAgtcaataaaaaaactaaaaaaaaaatcactcacCAAACTTCCTCTGCCATAGGACAATGAAACCAGTAAAGCCAAAAAAGAAGAATACTCCGGCTACAACAGACTTCCATTCCTTTGATCCCATGTTCATTTCAGCAAAGCTTTGCTTGAAACTAATACGATACATGCAATTTTCTCTTCATTGGACAGTGTTCCCCACGAtcccttttccttctccttcagAGACTTCTGCTCCTGGCTCAGCTCATTCACGAACTTGACTTCAGGGAGGGGCGTCTCTCGCCGATCGAAATATGGAGGAAGCGTGTAATCTTCCACCTTGGCAACCCCTATTTTGAGGTGATCAAAGACACAAAGCTCATTGAaggaaatttaaataataagacCACACAAACTTGCATGCTTGGACAGGATTTACACTGAGTAAACAAAATCATACAATGTGGTTttactgcagtttttatttgttactcAATGCGATTTAACCAAGAAGAAAATCAATGCAAGGTTGTTCTCCCCTAGAGAGACTATATAGAACtaatcagtttaaaaacataGCAACTGCTCTTCATTAGGCTATTCAATACTAACAGATGTATTTACAGTCAGGATAAAACACATGCCGATTGTGCTTGTGAAGGTTAAACTTAAAATGAGATTTAAAACCACTAACGAATCTATGACAATTAATCAAACTAGCCTGGTGCTAATTAATATGATGACCTTGATGCAAATGCCTCAAGGGAATTCTATTTAAGGCATCCAGACTACAGACAAAGGTCACTTTGATGGGTTTAAGGGacattaaacagtttacatgacaCCTTGGATCAAACTAATGCGCAAAATGCACTCTCATAATCATTCAGTGCCTGTCATCTCGtgtcaaaagaaaatgaaagagtaATCAATCATTTACCATGTCCACCACGCAAGCAGACGGAGGTAGAGATCGCCCGCTTCCCAACAAGACTCAAGGCTCTGGAGGACAACATTCTGGGACGAGAGagtcacagacacagagatcagacaacacaacacaaacctgTAATCACACAGACACTGCGAGATCAGACATCAACACACATCCAcaatcacacaatcacacagacaCTGCGAGATCAGATATCAACACACATCCacaatcacacagacacacagacactgcgaGATCAGACGACACACACGCGTGTAGGCGGGACCCCTGCGCACACGGCGTTCTCTCGGGTTCAGCTCTGGCCTGTCAAGCTGTTACACTAAATAACCTTCATACAACAGTATTATCTTAAGCTACATTTCGTATAACAATGAAGTGATTCAAAAAACGTAAAATAAAAGCCAAATCTAGTATTCTTAGCTGATCCCTGTCGTTAGCCTGGTATACAACTAGTCATGATCGGTTTAACGGTAGCGATTACACCGGCACCATAcaactataaaaacatttacaaaaaaatcgATTTAAggacgtttttatttttataattaatctgAGTTTAAATGGTTCATGATCACTGCCACACTGCGGTGGACACAAATGCACTTCCGATATATTCGATGCACAAGGTCAAACTGACCTGGGGGGAGAAGCAAaggaaattaatacatatacagcGAAAAATGTCTTCTTTGATCGACTTAATCGATGACATATTatacatgaaatacaataagataggattttcaaaaagcttctCCTCCAAGGTCTCATGCTTGACACAAAGCGGCTTCCTCAGCCACTTCCTCCTAGACTCAATGTCACACTGAACACTGCCGAGAATAAGACCACTTCTGATTTTCCAAACAACAAACACGATGTATCAAGTATTTTAGTTATTCATAACTATATTTCAACTGAGATCCAATGCATTAGTCAATCAGTACGTTTTAATACCGCGAATATAATACCGG

Function

GO:

id name namespace
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81427 lncRNA downstream 321877 30830181 ~ 30830542 (-) True G65109
TU81391 lncRNA downstream 414484 30730850 ~ 30737935 (-) False AMCG00020700
TU81392 lncRNA downstream 414484 30730850 ~ 30737935 (-) True AMCG00020700
TU81384 lncRNA downstream 450246 30700486 ~ 30702173 (-) True G65073
TU81382 lncRNA downstream 459052 30693148 ~ 30693367 (-) True G65071
TU81516 lncRNA upstream 56673 31212938 ~ 31217885 (-) True G65178
TU81517 lncRNA upstream 63278 31219543 ~ 31219744 (-) True G65179
TU81542 lncRNA upstream 234659 31390924 ~ 31412823 (-) True AMCG00020713
TU81567 lncRNA upstream 324491 31480756 ~ 31481969 (-) True G65221
TU81620 lncRNA upstream 492359 31648624 ~ 31648851 (-) True G65267
AMCG00020705 mRNA downstream 447 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020706 mRNA downstream 9016 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020702 mRNA downstream 347092 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020699 mRNA downstream 392336 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020700 mRNA downstream 414443 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020713 mRNA upstream 209398 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020711 mRNA upstream 270256 31426521 ~ 31432953 (-) True AMCG00020711
AMCG00020712 mRNA upstream 279363 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020717 mRNA upstream 362960 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020716 mRNA upstream 388303 31544568 ~ 31545686 (-) True AMCG00020716
TU81423 other downstream 343573 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 621283 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1619302 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1746783 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2355463 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 1204970 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1451597 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1498869 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1730099 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 2212360 33368625 ~ 33369105 (-) True G65756

Expression Profile