RNA id: TU81517


Basic Information

Item Value
RNA id TU81517
length 202
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G65179
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31219543 ~ 31219744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccttatttttgttttaagtatttaGCCGGACTCAGTTTTCCAaatggtcaaaatgttatgctGCAAAACTAGCAACAGTAGCTCCCcattagcatttatttttagtgtcaGGGAAGATCGCAAGCCTAACCCCAGAACATGGAAAAGGTGTGTTCATGAACTCATATTATTCTAAGGTGTAAAAATGATACTTTGCCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81516 lncRNA downstream 1658 31212938 ~ 31217885 (-) True G65178
TU81496 lncRNA downstream 63278 31152419 ~ 31156265 (-) True G65166
TU81427 lncRNA downstream 389001 30830181 ~ 30830542 (-) True G65109
TU81391 lncRNA downstream 481608 30730850 ~ 30737935 (-) False AMCG00020700
TU81392 lncRNA downstream 481608 30730850 ~ 30737935 (-) True AMCG00020700
TU81542 lncRNA upstream 171180 31390924 ~ 31412823 (-) True AMCG00020713
TU81567 lncRNA upstream 261012 31480756 ~ 31481969 (-) True G65221
TU81620 lncRNA upstream 428880 31648624 ~ 31648851 (-) True G65267
TU81656 lncRNA upstream 491790 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 536518 31756262 ~ 31756689 (-) True G65314
AMCG00020705 mRNA downstream 67571 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020706 mRNA downstream 76140 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020702 mRNA downstream 414216 30800582 ~ 30805327 (-) True AMCG00020702
AMCG00020699 mRNA downstream 459460 30758126 ~ 30760083 (-) True AMCG00020699
AMCG00020700 mRNA downstream 481567 30722783 ~ 30737976 (-) False AMCG00020700
AMCG00020713 mRNA upstream 145919 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020711 mRNA upstream 206777 31426521 ~ 31432953 (-) True AMCG00020711
AMCG00020712 mRNA upstream 215884 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020717 mRNA upstream 299481 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020716 mRNA upstream 324824 31544568 ~ 31545686 (-) True AMCG00020716
TU81423 other downstream 410697 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 688407 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1686426 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 1813907 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2422587 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 1141491 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1388118 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1435390 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1666620 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 2148881 33368625 ~ 33369105 (-) True G65756

Expression Profile