RNA id: TU81567


Basic Information

Item Value
RNA id TU81567
length 745
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G65221
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31480756 ~ 31481969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgaagGATGTTTTGGACTCAAAGAACATTGCAATTAAGGATTTGCAGTATGAGCTAGCTCGAGTCTGTAAGGCACATAATGATTTACTACGGACATATGAAGCTAAGCTCAGTGCGTTTGGGATTCCAGTGGATGAGCTGGGGTTTAAACCTCTGGAGACTACAATATCTGGACAGACTCTTGGTCAGGGGCCTGCAGGATTAGTGGCTGCCCCGACATAACACAGACAGTCTAAATCAAATTGCTAGGTGTCCATAAAAAGATATAATCAAAACACTCTGCACAAACATCTCTTTTAATGGACACATTTACCCtttgtttgaatgtgtggagCTCGGCATTTTAAAGATAAGTCAATTTCGcatgttttatacttttatatattcaCTTTGTCATGGTACGTtgacaccaaaaacaaaaaggaaacatcTAGAATATCAAATATTTCTCAGtaccaaaataaactgaaatatttcatACTTGGTTCATTTAGCGAGTATGCCTATTAACTGACTTTTGTGAGAATTAAGTGGATGTTTGTGGATCCACAGGCAAAAGTGTATTGTGAAGCAATATAGgatccaaacaaaacaattatttattttttggtctttAACTAAAATGATATACAGTTAATGGAAATACTAAGCAGGTAAATGTTATAGTTGTGGAAGATGTGCTACTAACTGCATAGTGGGATATCCtgtcattaatatgaaataaatcagaaatacaatAGTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81542 lncRNA downstream 67933 31390924 ~ 31412823 (-) True AMCG00020713
TU81517 lncRNA downstream 261012 31219543 ~ 31219744 (-) True G65179
TU81516 lncRNA downstream 262871 31212938 ~ 31217885 (-) True G65178
TU81496 lncRNA downstream 324491 31152419 ~ 31156265 (-) True G65166
TU81427 lncRNA downstream 650214 30830181 ~ 30830542 (-) True G65109
TU81620 lncRNA upstream 166655 31648624 ~ 31648851 (-) True G65267
TU81656 lncRNA upstream 229565 31711534 ~ 31711764 (-) True G65297
TU81681 lncRNA upstream 274293 31756262 ~ 31756689 (-) True G65314
TU81682 lncRNA upstream 275482 31757451 ~ 31758500 (-) True G65315
TU81708 lncRNA upstream 303546 31785515 ~ 31803792 (-) True G65337
AMCG00020712 mRNA downstream 32107 31435628 ~ 31448649 (-) True AMCG00020712
AMCG00020711 mRNA downstream 47803 31426521 ~ 31432953 (-) True AMCG00020711
AMCG00020713 mRNA downstream 76808 31365663 ~ 31403948 (-) False AMCG00020713
AMCG00020705 mRNA downstream 328784 31146087 ~ 31151972 (-) True AMCG00020705
AMCG00020706 mRNA downstream 337353 31139693 ~ 31143403 (-) True AMCG00020706
AMCG00020717 mRNA upstream 37256 31519225 ~ 31543659 (-) True AMCG00020717
AMCG00020716 mRNA upstream 62599 31544568 ~ 31545686 (-) True AMCG00020716
AMCG00020719 mRNA upstream 64404 31546373 ~ 31560989 (-) True AMCG00020719
AMCG00020718 mRNA upstream 82864 31564833 ~ 31573696 (-) True AMCG00020718
AMCG00020721 mRNA upstream 112259 31594228 ~ 31594905 (-) True AMCG00020721
TU81423 other downstream 671910 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 949620 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 1947639 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2075120 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2683800 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 879266 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 1125893 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 1173165 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1404395 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1886656 33368625 ~ 33369105 (-) True G65756

Expression Profile