RNA id: TU81596


Basic Information

Item Value
RNA id TU81596
length 1392
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G65246
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31564833 ~ 31566359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCGTTTGACagcaatacatttattcaatATTCCCCCCCAGAAAATTGGCAAAaccagtacaaaataaaacaattaggcTGAAGGTCAGGGGAGTAGTGGGGaattcacattattaaaataaaggaattgAGAATTGCTAAAATGTAACTGTTGCGATTTAAATATGTTCCTTTGTTTGCACATTAGTATCAAATGTTAACTTGGGAAggtatatatagatttttttttctttcatgtacTATTTTGTTAGCAGGTTATGAAATATCAATAACAAGCAATGATATAGTCAGTGGACTAAGACTGACACTAAGAGTTAGCAGAGACTAACACCGggggggggtggcgggggggtggggataGGCATCTCGCCCTCCTCCTCTGCAGTGGCATCCTGGTACTGCTGATACTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCGGTGAACTCCATCTCGTCCATGCCCTCACCGGTGTACCAGTGCAGGAAGGCCTTGCGCCGGAACATGGCGGTGAACTGCTCGGAGATGCGCTTGAACAGCTCCTGGATGGCCGTGCTGTTGCCGATGAAGGTGGAGGACATCTTCAGGCCGCGGGGGGGGATGTCGCACACGGCCACTTTGACGTTGTTGGGGATCCATTCCACGAAGTAGCTGCTGTTCTTGCTCTGAATGGCTAGCATCTGCTCGTCCACCTCCTTCATGGACATGCGCCCACGGAACACCGTGGCCACAGTGAGGTAGCGCCCATGCCGTGGGTCGCAGGCTGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTGAGCTCGGGCACCGTGAGGGCGCGGTACTGCTGGCTGCCCCTTGCGGTCAGGGGGGCGAAGCCAGGCATGAAGAAGTGCAGCCGGGGGAAGGGGACCATGTTGACAGCCAGCTTGCGGAGATCAGCGTTGAGCTGCCCAGGGAAGCGCAGCGAGGTGGTGACGCCGCTCATGGTGGCAGACACTAGGTGGTTCAAGTCTCCGTAGGTGGGCGTGGCCAGCTTCAGCGTGCGGAAGCAGATGTCGTACAGCGCCTCGTTGTCGATGCAGTAGGTCTCGTCCGTGTTCTCCACCAACTGGTGGATGGACAGGGTGGCGTTGTAGGGCTCCACCACTGTGTCCGACACCTTGGGCGAGGGCACCACACTGAAAGTGTTCATGATTCGGTCAGGGTACTCCTCCCGCACTTTGCTGATGAGCAGCGTGCCCATGCCCGAGCCCGTACCACCACCCAGGGAGTGGGTGAGCTGGAAGCCCTGCAGACAGTCACAGTTCTCACACTCCTTCCTCACCACATCCAGGACTGAGTCGACCAGCTCCGCCCCCTCTGTGTAGTGACCCTTGGCCCAGTTGTTGCCAGCTCCACTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81570 lncRNA upstream 78931 31485583 ~ 31485902 (+) True G65223
TU81557 lncRNA upstream 80363 31483492 ~ 31484470 (+) False AMCG00020715
TU81558 lncRNA upstream 80911 31483492 ~ 31483922 (+) False AMCG00020715
TU81491 lncRNA upstream 415072 31146087 ~ 31149761 (+) True G65163
TU81378 lncRNA upstream 862676 30700454 ~ 30702157 (+) True G65067
TU81619 lncRNA downstream 69404 31635763 ~ 31636329 (+) True G65266
TU81623 lncRNA downstream 91367 31657726 ~ 31659455 (+) True G65270
TU81629 lncRNA downstream 115755 31682114 ~ 31683154 (+) True G65276
TU81648 lncRNA downstream 145186 31711545 ~ 31711765 (+) True G65290
TU81702 lncRNA downstream 218458 31784817 ~ 31785133 (+) True G65332
AMCG00020714 mRNA upstream 60879 31496044 ~ 31503954 (+) True AMCG00020714
AMCG00020715 mRNA upstream 81127 31460314 ~ 31483706 (+) False AMCG00020715
AMCG00020710 mRNA upstream 145478 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020709 mRNA upstream 331209 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020708 mRNA upstream 349314 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020722 mRNA downstream 118770 31685129 ~ 31709788 (+) True AMCG00020722
AMCG00020723 mRNA downstream 147537 31713896 ~ 31720373 (+) True AMCG00020723
AMCG00020724 mRNA downstream 154503 31720862 ~ 31723055 (+) True AMCG00020724
AMCG00020729 mRNA downstream 159825 31726184 ~ 31753719 (+) True AMCG00020729
AMCG00020728 mRNA downstream 187953 31754312 ~ 31758498 (+) True AMCG00020728
TU81555 other upstream 80363 31459502 ~ 31484470 (+) True AMCG00020715
TU81504 other upstream 346993 31162601 ~ 31217840 (+) True AMCG00020708
TU81412 other upstream 793906 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 1989487 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 2099121 29464564 ~ 29465712 (+) True G64979
TU81717 other downstream 297024 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 527665 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 620255 32186614 ~ 32189381 (+) True G65433
TU81856 other downstream 707927 32274286 ~ 32278972 (+) False AMCG00020748
TU82011 other downstream 1026123 32592482 ~ 32594454 (+) True G65590

Expression Profile