RNA id: TU81619



Basic Information


Item Value
RNA id TU81619
length 567
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G65266
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31635763 ~ 31636329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctcgcctcctccttcatctcctccctcctcaactcctcactcctctctggctgtttcccttctgcttttaaacaagctgctgtcatcccactacTCAAGAAATCCACCCCTGACCCTACCTCACCTATCAGAAGACTAcccttgcctcctctccactccccttcctccagaaccgctccttctcatccctggcccctaagtggtaagtggtggaacgaccttcccagtGAAATCAAGACAGCgaagtccctgacctccttccattgattactcaagacacatctgttcagactctacttgtaatctAGTCGTTTAttatcctgtaaaattgcactgatTCAACATAATGCTTTGACATACCCCTTGCTTTGCATTACCAGtacatgtattgtttattttgattttccctATGCCTcttttcccttagctcttaatgATGCCTGCATTTActagcttttacaatctaggatctAGGACTTGTGTTGTTTACAAGTGTAtcaattggaatttgtaaattgcattatgctctgaactgcactgtatttttgcttaTATGGATTGTCtgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81596 lncRNA upstream 69404 31564833 ~ 31566359 (+) True G65246
TU81570 lncRNA upstream 149861 31485583 ~ 31485902 (+) True G65223
TU81557 lncRNA upstream 151293 31483492 ~ 31484470 (+) False AMCG00020715
TU81558 lncRNA upstream 151841 31483492 ~ 31483922 (+) False AMCG00020715
TU81491 lncRNA upstream 486002 31146087 ~ 31149761 (+) True G65163
TU81623 lncRNA downstream 21397 31657726 ~ 31659455 (+) True G65270
TU81629 lncRNA downstream 45785 31682114 ~ 31683154 (+) True G65276
TU81648 lncRNA downstream 75216 31711545 ~ 31711765 (+) True G65290
TU81702 lncRNA downstream 148488 31784817 ~ 31785133 (+) True G65332
TU81799 lncRNA downstream 456642 32092971 ~ 32093171 (+) True G65413
AMCG00020714 mRNA upstream 131809 31496044 ~ 31503954 (+) True AMCG00020714
AMCG00020715 mRNA upstream 152057 31460314 ~ 31483706 (+) False AMCG00020715
AMCG00020710 mRNA upstream 216408 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020709 mRNA upstream 402139 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020708 mRNA upstream 420244 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020722 mRNA downstream 48800 31685129 ~ 31709788 (+) True AMCG00020722
AMCG00020723 mRNA downstream 77567 31713896 ~ 31720373 (+) True AMCG00020723
AMCG00020724 mRNA downstream 84533 31720862 ~ 31723055 (+) True AMCG00020724
AMCG00020729 mRNA downstream 89855 31726184 ~ 31753719 (+) True AMCG00020729
AMCG00020728 mRNA downstream 117983 31754312 ~ 31758498 (+) True AMCG00020728
TU81555 other upstream 151293 31459502 ~ 31484470 (+) True AMCG00020715
TU81504 other upstream 417923 31162601 ~ 31217840 (+) True AMCG00020708
TU81412 other upstream 864836 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 2060417 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 2170051 29464564 ~ 29465712 (+) True G64979
TU81717 other downstream 227054 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 457695 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 550285 32186614 ~ 32189381 (+) True G65433
TU81856 other downstream 637957 32274286 ~ 32278972 (+) False AMCG00020748
TU82011 other downstream 956153 32592482 ~ 32594454 (+) True G65590

Expression Profile