RNA id: TU81629



Basic Information


Item Value
RNA id TU81629
length 913
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G65276
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31682114 ~ 31683154 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAATCCCCAATCAGTATACAAAGTAGTGTCAACATTTTTTAtgtacaaaaaatgaaacagaaaataaattagaaaaggcaacttaaaaatcaaaactttatATATTCATAAGGTATTCATCTTTCAGCACACTAATGTTGAAAGGAGGTCCCCACAGCGACAGGCGTCAGCACACAGTTCTGCAGTTCTGTTGAGCAGCATGTCCAACTGGCTTCTGTGTATGAGGCGCCattagggacataattcacccaGTGGTACATACACTACACTGAGACTCTGACACTATATAGAgacacactacatactgaaacACATACACTATAAACTGAGACTCatacactgtatactgagacGTCTTAGTATATAGTGCTTCTTGgcattagtgtgtgtgtctcagtatatagtgcatctcagtatatactATGTCTCAGTAAATAGTATATAGTGCGTCTCAGTAAATAgtagtgtgtctcagtatgtagtgcgtctcagtatatagtgcatctcagtatatagtacGTCTCGGTATgtagtgtgtctcagtatatagtgtgtctcagtatatagtgcgTCTCAGTAAatagtgtgtctcagtatatagtgtgtgcgtctcagtatataatgtgtctcagtatatagtgtgtgcgtctcagtatataatgtgtctctgtatatagtgtgtgtgtctcagtatatagtgcatctcagtatatagtgcgTCTCAGTAAATAGTGCGTCTCAGTAAACAGTATATAgtgtctcagtacatagtgtgtctcagtatataatgtgtctcagtatatagtgtgtgtgtctcagtagaTAGTGTGTCTCTGTATATAGTGCGTCTCAATATATAGTGTcagcgtctcagtatatagtgcgtctcagtatatagtgtcaGCGTCTCAGT

Function


GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81623 lncRNA upstream 22659 31657726 ~ 31659455 (+) True G65270
TU81619 lncRNA upstream 45785 31635763 ~ 31636329 (+) True G65266
TU81596 lncRNA upstream 115755 31564833 ~ 31566359 (+) True G65246
TU81570 lncRNA upstream 196212 31485583 ~ 31485902 (+) True G65223
TU81557 lncRNA upstream 197644 31483492 ~ 31484470 (+) False AMCG00020715
TU81648 lncRNA downstream 28391 31711545 ~ 31711765 (+) True G65290
TU81702 lncRNA downstream 101663 31784817 ~ 31785133 (+) True G65332
TU81799 lncRNA downstream 409817 32092971 ~ 32093171 (+) True G65413
TU81835 lncRNA downstream 499208 32182362 ~ 32268201 (+) True G65437
TU81852 lncRNA downstream 550996 32234150 ~ 32253861 (+) True G65450
AMCG00020714 mRNA upstream 178160 31496044 ~ 31503954 (+) True AMCG00020714
AMCG00020715 mRNA upstream 198408 31460314 ~ 31483706 (+) False AMCG00020715
AMCG00020710 mRNA upstream 262759 31413525 ~ 31419355 (+) True AMCG00020710
AMCG00020709 mRNA upstream 448490 31227122 ~ 31233624 (+) True AMCG00020709
AMCG00020708 mRNA upstream 466595 31201950 ~ 31215519 (+) False AMCG00020708
AMCG00020722 mRNA downstream 1975 31685129 ~ 31709788 (+) True AMCG00020722
AMCG00020723 mRNA downstream 30742 31713896 ~ 31720373 (+) True AMCG00020723
AMCG00020724 mRNA downstream 37708 31720862 ~ 31723055 (+) True AMCG00020724
AMCG00020729 mRNA downstream 43030 31726184 ~ 31753719 (+) True AMCG00020729
AMCG00020728 mRNA downstream 71158 31754312 ~ 31758498 (+) True AMCG00020728
TU81555 other upstream 197644 31459502 ~ 31484470 (+) True AMCG00020715
TU81504 other upstream 464274 31162601 ~ 31217840 (+) True AMCG00020708
TU81412 other upstream 911187 30767024 ~ 30770927 (+) True G65100
TU81277 other upstream 2106768 29525715 ~ 29575346 (+) False AMCG00020684
TU81272 other upstream 2216402 29464564 ~ 29465712 (+) True G64979
TU81717 other downstream 180229 31863383 ~ 31864706 (+) True G65343
TU81800 other downstream 410870 32094024 ~ 32095186 (+) True AMCG00020742
TU81825 other downstream 503460 32186614 ~ 32189381 (+) True G65433
TU81856 other downstream 591132 32274286 ~ 32278972 (+) False AMCG00020748
TU82011 other downstream 909328 32592482 ~ 32594454 (+) True G65590

Expression Profile