RNA id: TU81682


Basic Information

Item Value
RNA id TU81682
length 1050
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G65315
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 31757451 ~ 31758500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TagggaaatataatttatttgattctGTTGAAAACTTGTGCAGCATCCctgtatatatgaaaacatgtcaaaacaattgtattaattggtAGACGTTCACCAGCTGGAATCACCCGGTACCCCACCAGACCTGTTCATTGTAATCCATCATAACATCAGCTGACTGGTTTGGCAAGAAATCGTTttctgagattaaaaaaataaataaaataaaaaatggaaccatgtgcattttattcattAGTGTTTCAACACCTAATCTTCTCATATGAGTGTCTTTTCAGTCATTTCTCtacaaaattaaagtaaaaaacatttgcaatgcTTGCATTTTCAAggtaaaaatttaaaataaaaatacaggcTATTTTGgttgattacattttaagttggATATTATAACCAACAGACAATTCTAAGCTATCAAACTATATCAGTACgtttctaaataaatactataatcATGATACAGAACTAAACTTTTCTGGCGTAAAGTGACCCGAGTAAACGCAGTGCGTTTTAAacatcacagacacaaacacatttacttgCAGTGTCTGATGTGGAGCAAGCCTCAACTAATGCTTGTAATTCTActgcaatataaatacaaaaataaaatatattttttttctgaacatataaatatttatttcacatgtatAAATTAGACTAATCTGCAGACCGTGTTCCACACGTTTCTTGATCGAGGTTGTAATTCGTGCAGATGACTGGGGTGGGTTACATGCTCAGTGCTGACGAAGGAAACTGAAAAATCAGTCAGAGAATGCGTATACTCTTCAATAACAAaactaacagaaaataaaggggGAAACATTTCGGATTAGACTTTAATATCCACACAATAGCAGAAGCAAAAACCTGTAGAAAGTATTCTTCGTGATCCTGAAAGTGTTGTGTAACACTATTTCCCCGTCCTCCTCTTCATACCTTGGACTTGTTCTGGACTGGGAGGTACAGTTTGAACTCTGCTGGCAGCTCGTCTTCCGAGTACAGTCGGTCAGAGAAATAAACCCTTCTGATCCGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81681 lncRNA downstream 762 31756262 ~ 31756689 (-) True G65314
TU81656 lncRNA downstream 45687 31711534 ~ 31711764 (-) True G65297
TU81620 lncRNA downstream 108600 31648624 ~ 31648851 (-) True G65267
TU81567 lncRNA downstream 275482 31480756 ~ 31481969 (-) True G65221
TU81542 lncRNA downstream 344628 31390924 ~ 31412823 (-) True AMCG00020713
TU81708 lncRNA upstream 27015 31785515 ~ 31803792 (-) True G65337
TU81780 lncRNA upstream 299818 32058318 ~ 32061297 (-) True G65397
TU81868 lncRNA upstream 363385 32121885 ~ 32122833 (-) True AMCG00020746
TU81870 lncRNA upstream 427982 32186482 ~ 32187711 (-) True G65465
TU81873 lncRNA upstream 454227 32212727 ~ 32215757 (-) True G65468
AMCG00020727 mRNA downstream 22479 31731257 ~ 31734972 (-) True AMCG00020727
AMCG00020725 mRNA downstream 31691 31723181 ~ 31725760 (-) True AMCG00020725
AMCG00020726 mRNA downstream 86957 31662637 ~ 31670494 (-) True AMCG00020726
AMCG00020720 mRNA downstream 125394 31606288 ~ 31632057 (-) True AMCG00020720
AMCG00020721 mRNA downstream 162546 31594228 ~ 31594905 (-) True AMCG00020721
AMCG00020735 mRNA upstream 138826 31897326 ~ 31914451 (-) True AMCG00020735
AMCG00020739 mRNA upstream 265822 32024322 ~ 32038155 (-) True AMCG00020739
AMCG00020745 mRNA upstream 312701 32071201 ~ 32083067 (-) True AMCG00020745
AMCG00020744 mRNA upstream 346230 32104730 ~ 32109416 (-) True AMCG00020744
AMCG00020746 mRNA upstream 364203 32122703 ~ 32122933 (-) False AMCG00020746
TU81423 other downstream 948605 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1226315 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2224334 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2351815 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 2960495 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 602735 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 849362 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 896634 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 1127864 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1610125 33368625 ~ 33369105 (-) True G65756

Expression Profile