RNA id: TU81780


Basic Information

Item Value
RNA id TU81780
length 2014
lncRNA type inter_gene
GC content 0.33
exon number 4
gene id G65397
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32058318 ~ 32061297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaaattgtgatttattcatttattagtGACACTTGATCAGTACATTACACACAGCAGTCTGAAATGTGATCGATTTTTCACTAGCTCTGTTCTTATCAATAACCAAACATGAAAAGCTGGCATAATCATTAACTACCctcctgaaaataaaagcatactTTCTGATATACACTTGGATTATATTtcctaataatgtattttaagtataCTTAAACCAGGTATATTTGAATTCtatgcatatttttgtttttaattttagcatattatttatacaatatattttaattgtattatttatttcttagcagatgcccttatccagggtgactaattgtatgtacttattttgtattatttgtatacttAGTCAAagtaaactaaattattttgtgtactAATTTTATACTTTTAGTAACAGTACCACATTTATACTTTGTTGTACTATTAGTATGTTTAAGTAGACTTTACTTGGTTTTGCTTATATTTTGCATAGTTACACAATGTAAACTTATGTATAGACACTAATAGTGTTCTTCTAACttcaaacattaatttaacattaccattacattaattatacaaaCATTTGATTTACTGTCCTGTTAAAATGATAGGTTACAAACacaaccatggttatctgagaaagataATATTACACAAGGCCCCCCTTTGAACTGCTTCACTTGCCTGAGTTTGCCTGTGTTTTTGCTAGTCATCAATATCTGCAAAATGTGTAGGCAAGCTACATGTGCTGTCTGTGATAAAAGGACACTTCAGTAATATGCCAATATGAGATTCAAAGCTCAAATGAGATTAAGCAATTACCCCCAGATTTCTCACCACGGATTTCACATTAGAGGTCATGTTTCCCAAATCTATTTTTGTCTATTCAATCAATCTCTgtgaatttattattaatacttctatcttattttggtttaattgcagaaacattTGAGCCATCCaattttttatttcagcaaaACACTTGCATACAAACTGGAGTAGTATTAGTATCACCTGGTTTAACAGAGAAGTGAGTTGTCTGTCATCTGCATGAACGTTCACCCCATGTCTATGAATAATCTCATCTAAAGGCAACCTATATGACAAGAATAACAAAGGACCCAGGACAGAACCCTTTCaaggaaacaaaatactgtCTATGGAGgactgcttttatattttgtaagtcgccctggacaaggacgtctgctaacaaatacgtagtagtaataataataataataattattattattattattattattattattattatgtatgatACAAGGAACTATCCATTTGATATAAAGGAGGAGTCAAAAGGTCACAGACATTTGTTGTTAAATCCCATAAAAATATAAGGTCAAAATAATGTAAGCATTGAACATAAaaattttcatatatatatatatatatatatatatatattaattcatatacTTTCGTCTTATCTGCACCCTATAAGACCATGTAAGTCCCAAGTTCTGTACGCAATCTGCAATCAACAAAACACACTatcataaatattgtttaaccTTTAAGGAGATGTCAAAGGTGAAGGTCAAATCATGAGTTTGAATCTTAAAtggaaggtcaaaggtcaaactATTTTCACCACAAGCGCATCCTTTAATTGCTCTATGATTAAATTATACATGATTTTCTACCTAATAAAGAAATTAGGTATTAACAACTGTTTGATGCACCCTACACTTTCCCTTTAATAGATTAAAAGATGTCCTGGGCTGTACTGCGCTGTCCTGGGGTGAGAGGAGGACCCCTTGCTTTAGCTGCCCCTGTATGTGCTGTAGGAGAAACGGCTGAGGAGCAGGGGCACATGATACTTCTGAGAAGGGTCTGTGATATTGAAGACAATCTGCAAAATGGATAGAAACTGCTCTCTCCCAGAACTTGCCAGTACTGCCCTGTTTCAAACCGCATTTTGTACATTCCTGGCAAGAATTCATCCCAGGTCAACAGCCCCGGGCAGCGGCCATCGCCATT

Function

GO:

id name namespace
GO:0004806 triglyceride lipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81708 lncRNA downstream 254526 31785515 ~ 31803792 (-) True G65337
TU81682 lncRNA downstream 299818 31757451 ~ 31758500 (-) True G65315
TU81681 lncRNA downstream 301629 31756262 ~ 31756689 (-) True G65314
TU81656 lncRNA downstream 346554 31711534 ~ 31711764 (-) True G65297
TU81620 lncRNA downstream 409467 31648624 ~ 31648851 (-) True G65267
TU81868 lncRNA upstream 60588 32121885 ~ 32122833 (-) True AMCG00020746
TU81870 lncRNA upstream 125185 32186482 ~ 32187711 (-) True G65465
TU81873 lncRNA upstream 151430 32212727 ~ 32215757 (-) True G65468
TU81961 lncRNA upstream 296941 32358238 ~ 32365142 (-) False G65549
TU81987 lncRNA upstream 454106 32515403 ~ 32515617 (-) True G65571
AMCG00020739 mRNA downstream 20163 32024322 ~ 32038155 (-) True AMCG00020739
AMCG00020735 mRNA downstream 143867 31897326 ~ 31914451 (-) True AMCG00020735
AMCG00020727 mRNA downstream 323346 31731257 ~ 31734972 (-) True AMCG00020727
AMCG00020725 mRNA downstream 332558 31723181 ~ 31725760 (-) True AMCG00020725
AMCG00020726 mRNA downstream 387824 31662637 ~ 31670494 (-) True AMCG00020726
AMCG00020745 mRNA upstream 9904 32071201 ~ 32083067 (-) True AMCG00020745
AMCG00020744 mRNA upstream 43433 32104730 ~ 32109416 (-) True AMCG00020744
AMCG00020746 mRNA upstream 61406 32122703 ~ 32122933 (-) False AMCG00020746
AMCG00020743 mRNA upstream 62094 32123391 ~ 32138907 (-) True AMCG00020743
AMCG00020751 mRNA upstream 127253 32188550 ~ 32212493 (-) True AMCG00020751
TU81423 other downstream 1249472 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1527182 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2525201 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2652682 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 3261362 28788580 ~ 28796956 (-) True G64882
TU81960 other upstream 299938 32361235 ~ 32365142 (-) True G65549
TU82051 other upstream 546565 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 593837 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 825067 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1307328 33368625 ~ 33369105 (-) True G65756

Expression Profile