RNA id: TU81944



Basic Information


Item Value
RNA id TU81944
length 404
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G65534
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32443881 ~ 32444644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttttttttttttctgGTCGGAAAACTCTTTATTCTCACACAGCCTGTCCTCTTACAGCACATCACTGATCGCACCACATCCTATTCCACTCGATTGTGCTGGAATACATGCTAACTGCACCCCAGCATCACACACCACAGAAATagacaggcagagagaaggAAACGAAAATGAaatcccttttttaattttcttgctGGATAGAATGAAAGCGAGGCAGGGACAGATGGACAAAGTGAGGAAGAGTGAGCAAGGAGGTCTCCGCGCTCAGAGGTGGGGGAAGATGTAGCGCGTTGCCATGGCGAGGATGGGTGCTCCGGTGGGGACGCCGGGGAAGGGACCGGAGGAGCCGGCGATGTCGATGTGGGAGTAACACAGAGGGGCATCCGAGTCCACGCcatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU81909 lncRNA upstream 136162 32307438 ~ 32307719 (+) True G65503
TU81854 lncRNA upstream 174424 32268626 ~ 32269457 (+) True G65452
TU81835 lncRNA upstream 175680 32182362 ~ 32268201 (+) True G65437
TU81852 lncRNA upstream 190020 32234150 ~ 32253861 (+) True G65450
TU81799 lncRNA upstream 350710 32092971 ~ 32093171 (+) True G65413
TU81997 lncRNA downstream 118786 32563430 ~ 32585714 (+) True G65579
TU82017 lncRNA downstream 185079 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA downstream 185079 32629723 ~ 32686320 (+) False G65594
TU82043 lncRNA downstream 296556 32741200 ~ 32744735 (+) False AMCG00020783
TU82117 lncRNA downstream 434455 32879099 ~ 32882118 (+) True G65670
AMCG00020755 mRNA upstream 81219 32357858 ~ 32362662 (+) True AMCG00020755
AMCG00020756 mRNA upstream 88052 32346662 ~ 32355829 (+) True AMCG00020756
AMCG00020754 mRNA upstream 129499 32310490 ~ 32314382 (+) True AMCG00020754
AMCG00020749 mRNA upstream 154542 32281581 ~ 32289339 (+) True AMCG00020749
AMCG00020748 mRNA upstream 163046 32275039 ~ 32280835 (+) True AMCG00020748
AMCG00020759 mRNA downstream 5533 32450177 ~ 32454833 (+) True AMCG00020759
AMCG00020766 mRNA downstream 75555 32520199 ~ 32528034 (+) True AMCG00020766
AMCG00020770 mRNA downstream 96295 32540939 ~ 32551381 (+) True AMCG00020770
AMCG00020771 mRNA downstream 161127 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020772 mRNA downstream 207088 32651732 ~ 32656484 (+) True AMCG00020772
TU81856 other upstream 164909 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 254500 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 348695 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 579175 31863383 ~ 31864706 (+) True G65343
TU81555 other upstream 959411 31459502 ~ 31484470 (+) True AMCG00020715
TU82011 other downstream 147838 32592482 ~ 32594454 (+) True G65590
TU82142 other downstream 502087 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 663229 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1510162 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1614467 34059111 ~ 34059465 (+) True G65830

Expression Profile