RNA id: TU81961


Basic Information

Item Value
RNA id TU81961
length 2274
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G65549
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32358238 ~ 32365142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAATATATGAGTCAGGATGTATGtaattaatcatgtatttattgattgtgcATTCCAAGCACACGTTACATTTCATCTCATACACagcaatgcaaaacaacagaaacacatggaCTGATCACACTCGTTTCAGAATACATCTGTGTGGAAGGAGAGCAGCAGTGTGTGCATCATTCAGTAATGCATACGACAGGGGTCCCGGCGTTACAGGGTGACTCATGCACTGGGAGGAATGTGACTTGGTTAAGTGGTTGAGGTGTGGTAGTGGGGGCTACTGTAACTACAGGGCCTCAGAGGGGAACGTGTGGACCACTTCCTGCCACACCCCCAAGCTCATGATATCCCAACTTGACTCACTGATCGATTTCAAAGTTATTCCATCAACCTTTTTAGCTTCTTCTTTTTAACTGTCTTATTCCTGTTGGGTTATGATGTGTACGTACATCACGCTGTGTGCGTTGTTCTCCTGTAGTCGCCTGTGTAGCTGTGATGGTGCTTTATACAGTAAATCTGGTACGTGTGCAGTGCAAATTCAGTGACATGCGTTTTTGTATTGGGGTTGATGATGAGTTTCAGGGTTCTGgtattaaaattacagattcctgtttattttcatgcagCATACAACCTGTGTggatgtttttagtttttttttttatccttttaaCATTGTTGTACAGATTTTCATTCCCTGAACAATAcagcccccacacacacacctctcagATTCGACAACAATCGTAATTGTATCAGTGTGAGCACTACATTCTcatcaaaaacatacaaacaaagcaaaaaaacacaaatctttaAAGTGCAACATGATCCACGTTGCATGCATGTGCTGTAGCCTGGAGGAGCTGGGGCAGGACGGggcagtgtgcatgtgtgagtgtctctgggagtgtgtgtctgtgtgcgtgcgAGTGTCTGGGGAACAGGTGTGTAACTCGGTGGTTTTTGTACTCTCACTGTGGAGGAGGACCTCAGCTTCTCCAGTTCAACAGCAAGATGCAGATTTGAGAGtgagtataaatatttataaatcagtGTATAAATAGTACAAAGCCTTTTACTTCAGCAGGATGCAGCCGCCTAGATATTCCAATCATGTTAAGCAATAACATTAATGCTAATTATAAGGATTTATATATGCGAGTATACACATACCTCGGGAACCCGTTTTATACAGCGTGTGCAGATTTATTAGGCAATTATTATTCTTCAAGATGATTTCAACCATTGGAGAGATTCAATGCCATCATTGAAGccaaaactttattttgcatcaaaactgaatgttttagaaagaaaaagtgaGATGAAGCAATTATATCACCTCAAAATGATTCTACCCACTCATTATTTAGGTTGACATGGTTTGCAGGAAAACCATGcttggaaataataaatatttagaatACCGACTTCCTAATAATTATGCACACGCTGTCAGGGCAGTGTGTTCTAACGGCTCGGGTCAAGTGTCTGAGCCCATCGTCATAGCAGCGGGAGCCTCCGTGCCTCAGGCAGCTACAGGCCGGAGACTCCAGCTGGTACAGTCAGGGCTCTCAGTGTACAGAGCACAGAGCAAAGAATGCAGCATTTGTCTcaaccctccctccccccccactgccccaccccacccaccccctccctcccataCTGCGTGGACTGTGAGAGAGGGGTGACTGGTCTGAGGCTGGACATGTCCTCCATAGCCCACCAGAGCAGCTGGAAGCCCCTCCCCCAGCAGTCAATTAGTGTCTTTATGTCTATCTGTATTCACCTCACCTGCAACACCATGCCGTGAGGAGaccaaagaaaatgtaatccgCAGactccctgtccctgtccccagTGCCCTGTATcagtccctgtccctgtcccttaTCCCAGTCAGTGCACCATCAGAGTGCTGGTCAGGAGCAGCGCAGAGGTGGTGACCAGAAGTAGCAGCCCCTGACACAGCTGTGGGGCGGCAGCGTCGTTGTTGCCCATGCGTCCGCTCTGGGGTGCGGGGTTCTTCTCCAGGTAGCGCTCAGAGTAGACCAGGTAGAGCTCCACACAGCGACGCACCTTCAACTGCTCAATCAGCTCCGGGTACCCGATCTCCATGATGCTCACAATGTCGTCGTCCTCCTCTTTCTGCCCCCCACCTGGTGCAGGGCCTGCTGGGGGGTCTTGGATCTTGCCCTGGTCACACAAAAACGCCTATCCTGCGCTCACATCTCCTGCGTGTAATTCTCCCACCGTTGAATACTAGTTTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81873 lncRNA downstream 142481 32212727 ~ 32215757 (-) True G65468
TU81870 lncRNA downstream 170527 32186482 ~ 32187711 (-) True G65465
TU81868 lncRNA downstream 235405 32121885 ~ 32122833 (-) True AMCG00020746
TU81780 lncRNA downstream 296941 32058318 ~ 32061297 (-) True G65397
TU81708 lncRNA downstream 554446 31785515 ~ 31803792 (-) True G65337
TU81987 lncRNA upstream 150261 32515403 ~ 32515617 (-) True G65571
TU82054 lncRNA upstream 189718 32554860 ~ 32556557 (-) True AMCG00020767
TU82055 lncRNA upstream 192423 32557565 ~ 32558864 (-) False AMCG00020767
TU82209 lncRNA upstream 909034 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1440559 33805701 ~ 33852626 (-) True G65776
AMCG00020757 mRNA downstream 66784 32289896 ~ 32291454 (-) True AMCG00020757
AMCG00020753 mRNA downstream 88505 32267146 ~ 32269733 (-) True AMCG00020753
AMCG00020752 mRNA downstream 113760 32234154 ~ 32244478 (-) True AMCG00020752
AMCG00020751 mRNA downstream 145745 32188550 ~ 32212493 (-) True AMCG00020751
AMCG00020743 mRNA downstream 219331 32123391 ~ 32138907 (-) True AMCG00020743
AMCG00020758 mRNA upstream 2976 32368118 ~ 32369718 (-) True AMCG00020758
AMCG00020764 mRNA upstream 8946 32374088 ~ 32378924 (-) True AMCG00020764
AMCG00020761 mRNA upstream 19948 32385090 ~ 32396520 (-) True AMCG00020761
AMCG00020763 mRNA upstream 33293 32398435 ~ 32406525 (-) True AMCG00020763
AMCG00020760 mRNA upstream 74552 32439694 ~ 32443671 (-) True AMCG00020760
TU81423 other downstream 1549392 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 1827102 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 2825121 29529919 ~ 29533117 (-) False AMCG00020685
TU81300 other downstream 2952602 29381315 ~ 29405636 (-) True G65000
TU81155 other downstream 3561282 28788580 ~ 28796956 (-) True G64882
TU82051 other upstream 242720 32607862 ~ 32610695 (-) True AMCG00020774
TU82083 other upstream 289992 32655134 ~ 32657019 (-) True G65641
TU82127 other upstream 521222 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 1003483 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1857173 34222315 ~ 34239697 (-) False AMCG00020810

Expression Profile