RNA id: TU82083


Basic Information

Item Value
RNA id TU82083
length 861
RNA type TUCP
GC content 0.45
exon number 2
gene id G65641
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32655134 ~ 32657019 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTTAGCATGGATTCAGTCTTTATTCATAGCCTTCTGCATAGACCCACAGCGTTCGGTTTTACATTATTCAAGGAGTTTCACATTTATGTTCATGTTTCTTATTagtatttctaatttattttaattggtcttTATGAAGACAAGTTGTTTAATTAGGCGCAGCTGGGCGACAGTACAGCGCAGCGCAGTGCGTCTGTTCTCTGTTCACATTAGTTCTGCAGACACGTAGCTCATATCCTgttgcacgcacacacacacgcacacatactgacacacacatacttgcACATAATCATGCGTAATCTCTATTCtcgtttgtatttttttctacttctttTATGTGTACTGAGCAGTTCAGGGATCTTTGCAAGCAGTCGGGTCACTATTATTGGATCATGTGATTGAACAGAATAATTGTGattattatgactattattattctGCATAGAGCACCATCTAGTTAGTAGCACGCATGTTGAGTCGATGTCCGGTCTGTGGTCGGGAGTCAGTCTGTCCGTTCATTCGTTCCGCATTCATTTCTTTTCCTTGGgtttctcctccttctctgctcctttctcctcctccttctcttcctctccgcCCTCTTCTTCTTTGGCCTCGTCTTCTCCTCCTTCATCTTGACCCTCTTCCTCTGCTTCTGCCTTCTCTCCCTCGTCCTCAGCCTCTCCTTCCTCTGCCTCTTCCTTTNNNNttttcctcctctgcctcttcCTCAGCCTCCTCCTGTTTGGCGTCTCCCTCCTCGTCTTTGTCGCCACCTAGGGGACGAAAATATAAAGCGGGGAAGAAAGTCCATCGAGACAAGAATGTCAAGTGGTGTAGTGCAAGCGTGGTGTCG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 96270 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 98577 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 139517 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 289992 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 439377 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 617157 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 1148682 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 1174716 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 1181228 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1304158 33961177 ~ 33962191 (-) True G65813
AMCG00020778 mRNA downstream 10584 32642924 ~ 32644550 (-) True AMCG00020778
AMCG00020779 mRNA downstream 14899 32630067 ~ 32640235 (-) True AMCG00020779
AMCG00020781 mRNA downstream 30540 32619774 ~ 32624594 (-) True AMCG00020781
AMCG00020776 mRNA downstream 41177 32611491 ~ 32613957 (-) True AMCG00020776
AMCG00020774 mRNA downstream 44426 32608849 ~ 32610708 (-) False AMCG00020774
AMCG00020773 mRNA upstream 11892 32668911 ~ 32674378 (-) True AMCG00020773
AMCG00020784 mRNA upstream 42180 32699199 ~ 32703449 (-) True AMCG00020784
AMCG00020785 mRNA upstream 89727 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020787 mRNA upstream 168636 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020788 mRNA upstream 305522 32962541 ~ 32980525 (-) True AMCG00020788
TU82051 other downstream 44439 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 289992 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 1846288 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2123998 30522986 ~ 30531136 (-) True AMCG00020694
TU81316 other downstream 3122017 29529919 ~ 29533117 (-) False AMCG00020685
TU82127 other upstream 229345 32886364 ~ 32891493 (-) True G65679
TU82216 other upstream 711606 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1565296 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 2151755 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 2205600 34862619 ~ 34865305 (-) True G66054

Expression Profile