RNA id: TU82117


Basic Information

Item Value
RNA id TU82117
length 263
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G65670
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32879099 ~ 32882118 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCTTCCATGTCGGGGCCTTCCAGGCcatgcatgttaaataaatatattattgtctGTACTTCAAGTCTGATTTTTTATAGAAGGGTTCAACACTTGGCGTCAAGAACAGGGTCTGCCTCCACTGCCGGGCCCAAAATGGTGGGAATTTGGGTTATGGCACAGGCAAATGATTCAggtatgttttacatttaatttcctttaaaagttgtattaagttctttattttgcagattcagatgtgttcatttatatttcaaaNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82043 lncRNA upstream 134364 32741200 ~ 32744735 (+) False AMCG00020783
TU82017 lncRNA upstream 192779 32629723 ~ 32686320 (+) True G65594
TU82018 lncRNA upstream 192779 32629723 ~ 32686320 (+) False G65594
TU81997 lncRNA upstream 293385 32563430 ~ 32585714 (+) True G65579
TU81944 lncRNA upstream 434455 32443881 ~ 32444644 (+) True G65534
TU82306 lncRNA downstream 1167876 34049994 ~ 34051037 (+) True G65829
TU82308 lncRNA downstream 1180034 34062152 ~ 34062595 (+) True G65831
TU82357 lncRNA downstream 1340228 34222346 ~ 34261929 (+) True G65873
TU82362 lncRNA downstream 1357771 34239889 ~ 34267100 (+) True G65877
TU82380 lncRNA downstream 1534477 34416595 ~ 34480123 (+) True G65891
AMCG00020786 mRNA upstream 54197 32811293 ~ 32824902 (+) True AMCG00020786
AMCG00020782 mRNA upstream 108456 32767332 ~ 32770643 (+) True AMCG00020782
AMCG00020783 mRNA upstream 136860 32707933 ~ 32742239 (+) True AMCG00020783
AMCG00020772 mRNA upstream 222615 32651732 ~ 32656484 (+) True AMCG00020772
AMCG00020771 mRNA upstream 270547 32605771 ~ 32608552 (+) True AMCG00020771
AMCG00020789 mRNA downstream 35502 32917620 ~ 32923763 (+) True AMCG00020789
AMCG00020791 mRNA downstream 281297 33163415 ~ 33179686 (+) True AMCG00020791
AMCG00020793 mRNA downstream 774508 33656626 ~ 33660550 (+) True AMCG00020793
AMCG00020794 mRNA downstream 936943 33819061 ~ 33835453 (+) True AMCG00020794
AMCG00020795 mRNA downstream 959752 33841870 ~ 33844518 (+) True AMCG00020795
TU82011 other upstream 284645 32592482 ~ 32594454 (+) True G65590
TU81856 other upstream 600127 32274286 ~ 32278972 (+) False AMCG00020748
TU81825 other upstream 689718 32186614 ~ 32189381 (+) True G65433
TU81800 other upstream 783913 32094024 ~ 32095186 (+) True AMCG00020742
TU81717 other upstream 1014393 31863383 ~ 31864706 (+) True G65343
TU82142 other downstream 64613 32946731 ~ 32989445 (+) True G65691
TU82157 other downstream 225755 33107873 ~ 33108426 (+) True G65705
TU82274 other downstream 1072688 33954806 ~ 33959682 (+) False AMCG00020796
TU82307 other downstream 1176993 34059111 ~ 34059465 (+) True G65830
TU82376 other downstream 1522416 34404534 ~ 34411620 (+) True AMCG00020820

Expression Profile