RNA id: TU82127


Basic Information

Item Value
RNA id TU82127
length 2054
RNA type TUCP
GC content 0.48
exon number 4
gene id G65679
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32886364 ~ 32891493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCCATGGACTGGACAGGGGGATCCACTGATTTGTCAAGGGAACAATGAGGACGGCAAGAGGCCCCGTTACAGAGGTGGCGTTGTGTCTTTGCCTTGCACAATGAAGACTTTGGTTGAACAGAGGCTGTGTACCACCATATTCCAACTGGGACAGCCCCACCTTCACAAGAGCGCTACCGGCCCGTGCTTCTGGCGATGTACCAGGAGCTGAGAGGACTGCTCCATTAAATGAAGACTCAAGGAGTAATTGTGGAGAGCAGCAGACCCTGGGTGGCCTCATTGATGCTTGTGAAGGAAAAAGGCAAAACCCTGTGGTTCTGTATTGATTATCGTAGGTTAAAATCGGTAATGCATAAAGATGCCCACCCGCAAATAGGAGGAGGTTATGGCCGTGTCTCGTCGCACCTGGTGCATCAGCTCCTGCCTCAACAGGCCCATCATCTGGCGGTGTACTGGTCTCTCAGAGTCTCTTCTTCCTGGGCCGACCCCTGGGTTTCCTCCCAGTGCCACCTGGAAAACAACTCACGAAGCCGGAGAGTGAACACCACTACAGTCTCCCCTACAGAATTTTGCCCTCAACTCTGCTTTAGACTCCCCGAGTTGGTACAGTGAATCCAACACTCAACAAACCTTTTGACTGGTGGCCCATTCCCCCGCTTTTAAAAGCAAGACCTCACATTTTGCATCTCCCTCCAAGGCCTCACACAGGAAATCTACtttctgtgattaatttaaatccTGTGCCTGTAGCATGGCCTGTAACTGCCATTTCTATTCCTCATAAttattctctctccccctttaaATTTAGGGATCAATGGTGCTCCCATGTACAAGGGCATGGCTACAGCCCCATCCAAACGAGGTGTACCTCCTGGGGGCGCCTGCTCCTCCATATTGGGTGTTCTGAGGTCCTGCCATGACTGCCAATGTGTCACAGAGAAGAGTGGCCAACCACACCCCGCGCACAGGTTCGGACCGGACCCCAGTACACCACATTAGACCCAGGTTTCAAGCCGTCCTTCCGACTGCTACGAAACACCGCACAGAAGCACAGCCTCCAGACACAACTACAGCCCTGTCGGCCGCAGAGAAGCCCACTCTGTCTGTGAGCCCCAGTGTGGCGGGAATGGACAGCAGTGTGGTGCTGCGCTGTGATGCCCCGCGCTCTCTCTCAGGAGTCCAGTGTCCTTTCTACACAGAGGCCGGTGGACAGGAGCTCGGACAGGCGCAGATGTGATGGTTTTCATTTGACCCCCATTGGCCGACTGCGTGTTACTGGCCCGTAATCTCAGTGGAGGACTCCTTCTCGACTCAGATGGAGAGCTGCCCCTCAGACACGGACCACCTCGATGGACTCTCCAATGATCCAACTCCACTTGGCTCTTGTGCTGCATGTCTGCTGGCCATTTTGGTTGCATGCCGTTGTGCTGCACTGTCCAATATCTCCTTGCCTCTCTCATCATTCCTACTGGCGGCAGCATTCATACCTAAGAAGGCAAATTCTCTACTTTCGATCTAAAACACAGTCCAggctaaataaaaacaatatgactTGTTGGTGGTGCTGTATCTCAgtaatacatactgtatgtgtgaGTTTAGTGTCATTATGGATGAAGTATACATTTAATGCATATGAATTACTCCTCCAATGCTGATATATTCCACAcctattcttattttttattttctcaggttgacatttcagttttgcagttgataacataaaatatgttgataACTCTAAATATCGTCCCCACAGAACATCTCTGAGTGTGGAGAGCTGTGTTCAGTTCATCcagttaattatataattagacCAATTAGGGAGCCAAGGTGTTGGCCTGCAACACAAACCAGAAGACACCCTCCAGGACTGGACTCTAACATCTctgatcaaaagaaaaaaacacctcagtgaagtgtatttttgtttcaaaaaataagtaatggttacttattccTTATgtacgattaaaaaaaaaatgtattacttattttctaatttttcaatttctgaataaataagtgatgATACTTTCTTGTTAc

Function

GO: NA

KEGG:

id description
ko05206 MicroRNAs in cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82055 lncRNA downstream 327500 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 329807 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 370747 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 521222 32358238 ~ 32365142 (-) False G65549
TU81873 lncRNA downstream 670607 32212727 ~ 32215757 (-) True G65468
TU82209 lncRNA upstream 382683 33274176 ~ 33274444 (-) True G65753
TU82240 lncRNA upstream 914208 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 940242 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 946754 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 1069684 33961177 ~ 33962191 (-) True G65813
AMCG00020787 mRNA downstream 59735 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020785 mRNA downstream 138092 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020784 mRNA downstream 182915 32699199 ~ 32703449 (-) True AMCG00020784
AMCG00020773 mRNA downstream 211986 32668911 ~ 32674378 (-) True AMCG00020773
AMCG00020778 mRNA downstream 241814 32642924 ~ 32644550 (-) True AMCG00020778
AMCG00020788 mRNA upstream 71048 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020790 mRNA upstream 254968 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020792 mRNA upstream 306139 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020798 mRNA upstream 1024088 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020804 mRNA upstream 1101316 33992809 ~ 33995725 (-) True AMCG00020804
TU82083 other downstream 229345 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 275669 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 521222 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 2077518 30803234 ~ 30808846 (-) False AMCG00020702
TU81356 other downstream 2355228 30522986 ~ 30531136 (-) True AMCG00020694
TU82216 other upstream 477132 33368625 ~ 33369105 (-) True G65756
TU82397 other upstream 1330822 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 1917281 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 1971126 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 2258075 35149568 ~ 35170179 (-) False AMCG00020853

Expression Profile