RNA id: TU82216


Basic Information

Item Value
RNA id TU82216
length 481
RNA type TUCP
GC content 0.42
exon number 1
gene id G65756
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33368625 ~ 33369105 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcattgaaaatgggtcgtggatgggtattacagcatgacaatgacccaaaacacacagccaaggcaacaatggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcaagttgccaaacatcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccacgaagtactaagtcgaaggggtcaaatacttatttcattcattaacatacaaatcattttataacttttttgaaatgcgtttttctggattttgttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttcttt

Function

GO:

id name namespace
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82209 lncRNA downstream 94181 33274176 ~ 33274444 (-) True G65753
TU82055 lncRNA downstream 809761 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 812068 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 853008 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 1003483 32358238 ~ 32365142 (-) False G65549
TU82240 lncRNA upstream 436596 33805701 ~ 33852626 (-) True G65776
TU82248 lncRNA upstream 462630 33831735 ~ 33835514 (-) True G65783
TU82241 lncRNA upstream 469142 33838247 ~ 33852626 (-) False G65776
TU82287 lncRNA upstream 592072 33961177 ~ 33962191 (-) True G65813
TU82289 lncRNA upstream 612685 33981790 ~ 33982026 (-) True G65815
AMCG00020792 mRNA downstream 160849 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 212064 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 388100 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 541996 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020785 mRNA downstream 620353 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020798 mRNA upstream 546476 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020804 mRNA upstream 623704 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 653914 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 687849 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 743538 34112643 ~ 34113689 (-) True AMCG00020807
TU82127 other downstream 477132 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 711606 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 757930 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1003483 32361235 ~ 32365142 (-) True G65549
TU81423 other downstream 2559779 30803234 ~ 30808846 (-) False AMCG00020702
TU82397 other upstream 853210 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 1439669 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 1493514 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1780463 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1793709 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile