RNA id: TU82240


Basic Information

Item Value
RNA id TU82240
length 4850
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G65776
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33805701 ~ 33852626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACCGGGAAAGGGTGAAGTCTGGatcttgaaaaagaaaaagaaaaaaaaaaaagctgtgggGTAATCGATTCCACTCCCTGCCTCCCTGGAGAATGGTGGTGGAGCTGCCTGGGAGGGAGCTGCCATCCCAGCAGCCATTCTGCACTTACTGATGCATCCTGGGAGAATTCCTCTGCTCCTCCGGCTCCTTAAACGCCTAATGCAGTGCATTAGCTCCCCCCGCTTAGCATCTGAAAGAGCTACAGAGCAACTGAAGTGAATTACACACTTACCCAAGGCAGGAGACCTGGGGCGAGCTGCCATCCCGGCCCCCGTGAGTCACTAACAGCTTTCTGAAATGCGAAAGTGCGAAAACGCAGACAAACGGATCGCTGTTTGGGATCGCTTGCACGTCGGTATCACGGGGGAagtggttttcattttctttcaggtGGACCTggatttcatttaaacattcacaGAGAAGCACAACAAGACACTCGAGTCGCAGGCAGTTCTTTGAGAGACTTTCTTTAATGGCACATTATGAGTAGTGCTACGCTTACATGTCTGATGattaattacaatattacaaagagctacccaaaaaaaacaagtaaacaaacaaaaactaaaaaactggAAAAGCAGGAAACAATTTACTTTGGCTCAGTGAACTCCTGAAGCTTtcggaaaaacaaaacaaaaaacccttCACATGattcagttattaaaataaacacaactaaAAAGCTTAACGATGTTAGATGTTGAACAGAGATGAACTTTGTACAGTACTTCTCACGTTGCTCAGAGTAAAAGTGCCTGGAGCTAGTGAAGATTCACTTTAAATGACCAAATCAGGGTTGTTCATTGTCGTCTCATTCGCCCAGCAGATATTCAACCCAAGCCCCGTCCACAAAGTTCATCTGACAGAATCATTCAATGACttcaatgattaaaaaaaacaaaaaaacagaacgaGTGATGAACTCTCCgtttcaagaaagaaaagaagaagagatcCTGTGGCcagttacacaaacaaacaagtttaCCTCCTGAAGTGTCACTAGGTTTTCACGAGTGCCATAACACAATGAAGTCTACTCAATAGTTAAGGGAGAAGCTGCATTCATTTATCCTTAAGGTGTTCAAAGCAGCCGCCCACTGGCCCAGATAACTGGCTTCTCATAGACCCTACAGAGAGACGCACCAGTGGAACTTCTGGTTATTTCCTTGTCGGGGTCCAGATGATGGATCCCACACGATGTGAAAAGGGGTCAGGCCACAGTCACCACGGGGGACTGGCACTACCGAGAACCCAACAACAGGACCGAGTGGACGTGCACAGCGATCGGACACCTGTCGAACAAGTAGATACATGAAAATATATCCTGTGAGCGAAAATGCCTGTGAAAACGACAATAATGAGGACATGTAGCCAgacatgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgtgaggaccTCGTAAAACAGGACTCCAATTGCTGGATTCCTGAATGTGGAGGTGGACCCACAGCAATGAAATGTTTCGatggaaatatgtaaaaaaaaaaaaaaaaaaaaacatgacctcCTACATGTGCTCTGCTACAGCTAGGCCGAGAAGTCACACCAGGGAGCCGGGCGCTTGGGTGATCTGCCGTTTGTTTGACCTCTCTATTATCACGTGGATAAGAATGagaaaaactgaatacaattaattttaaaatatagttacGAATCTTTGAATTGTGCAAGTGCCAGGTGAGGAACGACAGGTGAAAGCACAGCGAGTGGAGGCCTTGCCACCTCCAGCCTCCACCCCCAGCCCAAATCTGCTTTGTCCTCCGCTCTCCACGTGCCAGGCTCTGTCTCCTCTAGCGGTACAGAAATACAGGTcaccatatttacatttattttttaatccatgCGTGTACCATGCGGTTTCGTTTCCACGATCCTTACTGCCCTTCTCGATGCAGTTGCGGCAGTTTTTCTTATaagattataattaatttttacACCCAAGAGCTTCTCTTTGCATTTTAGGTCTGTTTCCCACACAAAAGATGCCTGCGATGAGGTCGGATTcttcttttaatcttttaatttccCCTCCCTTTAATTTAGCGAAGCCATGCGGACTGCGTTCCCATGCATCACAGCTAAATATAGACACGTACTTtgggtttttaatttatttcgggttcatttaataaacataacatacaaacaaacaaaaataagatcAATAAAACAGCCCAGTTTTGCTGCAGACAATGAAAGTCCTACCTTCACTGGGGGAAAGAGAAGTCAAACAGGGTTGGCCACTCAGACCTCCCCCACATCCCCACTTGCTATTGGACTCTTGAACTGGTCTTGAATGAACGCAAGCAAGACCACGAGACTTCCCACAATTTTTCAGTATCTTACTTTTCTTGTCCCGGACGCGGCTGTGAGCTCGCCCCTCTGGGTGTGAAAAAGCGCAGGGCACAGAGGCGTGGACAGCTACTGGACACACACGGCATGCAGGAAACCACAGGAAGAAAAGCACCATCAAAATCATACTCCACACTCAAAAAgaagatcaaataaaatcacGGAGGCTGccgaggattttttttttaacatccaaACCTTTCGGTTTGATTAATTGAAAGAGACACGACTGTCACGGTgactattttcattattttttgtttaaaggatAAACACGGGGCCCTGCCCTTCAAACTCACCATTAAAGCTTTTCTTATACATCCCCCTCCCTTTCTAACTCAGCTTGTGAAAGAAAggaatcaaacaaaacataacaaaaaaagaacagaaacaaagacacacCTCTTTGTCTCGGACCCTGTAACCCAGGCCTGACTCTCCTTCATCTCTGATCGCTACATTTCTGGCTCTGTACCTTCACAGTCGGATAAAGTGCAGCTTCTGCTACGGCTCTCCTCACAGAAGAGACACAACAGTAGTACAGCAGGCAGAGTTGCTACTGGGGGGGGTGTTCATAATAAAGAATAGAAGTGTGCAAGAAGCTGCCTAAAGTCAAACAAAGCACTGGGAGACACTGTTGAGGATGAAGCTTGTGCAACATTTTTGTATGTGCTTGTAATCACACTAAAACATCTGTCATAATACAGTTATAACATGCCTTCTTTAAAACGGATACTCTGAGAAGAGGAGAGATGGGTTAAGGGTTTTCGGGATGACCGAGGCTGGGAGAACTTGGGTCCTGCTCACTTTGCGTTTCACTAGGGAGGTCCAGTGACTGCCATGGGATTATACGCATCTAGTGGAAGTCTTTCACAGTGTCCGCCACGCGACGGCCAGCGCGCACCGCTCCAAATGCCTTTTCTTGGCCAGTTTCCTCCCAGAAATTCTCACAGTACAGGGACGCACAACTTCTCAGCACTACTTCACATGGCTGGTGTCGGACGAGCCCCAGAGACCTGCTTACACTGGAATCCTACCCGCCACCCGAATCTGAATAAGCACATTTGgagcataataaataaactgccaataaaattaaagcaaacagCCCCCTAGAATCTCACAAGAACATCGATCCAAGCCTGGGTTTCTCTCGTCTCTTTTCGCTCTCTCAGCAGATGAGCAGTGGATTTGGATTGATCGAGCCGGGAGTGAAAATGGCAGAACGGAGCCAAGGGTGCATCTGGGAAAACTGCACTTCTACACAAAACTGTGACTGGGATACCCTGCGCTGTGCAATGTCACTGCAGTCACAGCCAGTGTCGCTTCTGTCTCAGCTTGCCTGGTGTGACAATTCGGCCAGCTTCACCGCGGCCCGACACGCAAACTCGTGTTGCTGTAGCACAATGGAGTGCCCGTGCTTCCGGCAATACGCAAGCAATTCACACTAACCTAGCTACTGCTCTACATTCATTTAATGCCCTGACACGCCATGCTGTTTagtcttttttatatttctgctcTGTTGAAAACCATCCGCTGGtctaaaaatgcaataataatttaaaaagatcaaATAGCTGGGAGAcagcaggaaaaacagaagttaaaaaaaaaaaaacctacagaGGTGTGTATGTGCGTACTCTAAGTAAATACTGGGACTATATGCATCAAATGCTGATTTAagatactaaaacaaaacaaaaatcaatcaagataaataatactaatttaaaaacaaaagtttgacCGGGGGTTATTGTGCGGTTCGTTATGAAGGGACAgactctctctgtgtctctgcctgGACTCCCCGGTCGTCTCTATTCCCTCCTCTGCCCCGCCAGCGCCCCCGGCACCCCCGCACGGGACGCTTACTCCACCCGTTCACAGACAGACGGGTTCGCCTCGCTCTGGTGCTGAGCTGGGCGGGCCATCCTGTGAGATCAGACTAACTCCTCGTCCAGCAGTGTGGATTCAACTCTGAACAGTCTGAGCCCAGTGTGTGTATACTGATATGATCACCTCTGCCTCTAAAGTGCACGTCCTCCTCCACTCTTTTCCCAATTTGATCAGATTTccagttttctgttgttttggaACTCAAATACTGCGCTGTGACTCTGGGGGCCGCTGCTGAGATGCCAAAGCGAAGCGAAGCCaggaaaagaagagaagaggCGATTCAACTAGcaaacacacacccagacacGACTAAATCACCGTCCTTTCTAATTGGCTAGTGTGTAGTCGGATAGTTTGTCATTTATAATGGGCTAGTTTCCTATGGCTGAAATCGACACGGCACAGAGATAAAGGTCTGCAATATCGTTTCAGGAGCGACTAGAGGCATTTTTCTCcgtttttggttttaaataaatggctgCAGTCAGTTTCACTTCATAGTAACCAATTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82209 lncRNA downstream 531257 33274176 ~ 33274444 (-) True G65753
TU82055 lncRNA downstream 1246837 32557565 ~ 32558864 (-) False AMCG00020767
TU82054 lncRNA downstream 1249144 32554860 ~ 32556557 (-) True AMCG00020767
TU81987 lncRNA downstream 1290084 32515403 ~ 32515617 (-) True G65571
TU81961 lncRNA downstream 1440559 32358238 ~ 32365142 (-) False G65549
TU82287 lncRNA upstream 108551 33961177 ~ 33962191 (-) True G65813
TU82289 lncRNA upstream 129164 33981790 ~ 33982026 (-) True G65815
TU82324 lncRNA upstream 197370 34049996 ~ 34051069 (-) True G65844
TU82325 lncRNA upstream 199834 34052460 ~ 34053108 (-) True G65845
TU82340 lncRNA upstream 263980 34116606 ~ 34116943 (-) True G65858
AMCG00020792 mRNA downstream 597925 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 649140 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 825176 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 979072 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020785 mRNA downstream 1057429 32746746 ~ 32748272 (-) True AMCG00020785
AMCG00020798 mRNA upstream 62955 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020804 mRNA upstream 140183 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 170393 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 204328 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 260017 34112643 ~ 34113689 (-) True AMCG00020807
TU82216 other downstream 436596 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 914208 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1148682 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1195006 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1440559 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 369689 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 956148 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 1009993 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1296942 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1310188 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile