RNA id: TU82287


Basic Information

Item Value
RNA id TU82287
length 1015
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G65813
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33961177 ~ 33962191 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTGCAGATCGCAACCTGATGCACTGCGATGCATCTGTATTAAAGTAGCAAAGCAGCATGGTGTCTAATGCTGAGCACAGGTGCGCGGCGCTGGCTCTTTTAGGGTGAGCTGGGCGCATGTTGTACATTTTCATGCGCAGACCCACACAGAAGAAAGCAAACGAAACTCACCGTGTATTTTAAAGCCAGACAGGCGTCTCGCAGGTCTCTCCGAGTCTGAAAACACGTCCCCCTCAGCTCACACTCAGATCGCTGCCCTGCCCGGCTCGGTGCCCATTTCTTCTCCCAACAATAACCCACATACACCCGTCAGGAGCAGAAGTCACTGTATCCAATGCGCACACGAatgatgataaataaataaaataacttccCTCCTTAGTGAAAATCCCCCGTGAAACAGGTCAGCTGAGtttaaatagcttttaattCACTTAAAAGAAGTTAAAGACTTAAGCCTGGCAGTGATGGCAGGCCGCCCCTCTCCGCGCAGGGCCCCGCTCTGGCGACGCTAATCTGGGGTGACGCGACTCCGGCGGCCGGCGCTTTGTCTCGGCTGTGCTCTTCACACCGCACTCGCTGTCCGGGTGTCGGGGAGAGCCAGAGCCCGTCCAGCGCCCCGGCCGTGTGTCCCGCTGCGTGCCCCGCTCGCCGGCATGTTTTACTGGAGACCCGCCGGGGACGCAGGCTGGACAGGAGCCTCCGGGGCAGTCAGTGCTGTCCGCACATCTGTATGGGACAGTTGTGACCCAGGCGCTATACGAGCAGGATAGGTGGTCTCAGCTCAGTGTCCCCCTGGCGTGTGCGACCTCAGCCGCCTGTGTGCCCAGCAGTGCCCGCCCTGCCTCCGTCTACCGGCCGGCACCGTGTCCGTGCGCTGTCGTCCGGGGACAGTGGCcgtttctctcttcctcttcctcctcctcctgcttgCATTGAGTTTTACAGTAACGAGTGGTGGAGGCGCTGgctttccctctcctctctctctctctcgcactgaCCAACCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82240 lncRNA downstream 108551 33805701 ~ 33852626 (-) True G65776
TU82241 lncRNA downstream 108551 33838247 ~ 33852626 (-) False G65776
TU82248 lncRNA downstream 125663 33831735 ~ 33835514 (-) True G65783
TU82209 lncRNA downstream 686733 33274176 ~ 33274444 (-) True G65753
TU82055 lncRNA downstream 1402313 32557565 ~ 32558864 (-) False AMCG00020767
TU82289 lncRNA upstream 19599 33981790 ~ 33982026 (-) True G65815
TU82324 lncRNA upstream 87805 34049996 ~ 34051069 (-) True G65844
TU82325 lncRNA upstream 90269 34052460 ~ 34053108 (-) True G65845
TU82340 lncRNA upstream 154415 34116606 ~ 34116943 (-) True G65858
TU82349 lncRNA upstream 252866 34215057 ~ 34215559 (-) True G65867
AMCG00020798 mRNA downstream 37742 33915581 ~ 33923435 (-) True AMCG00020798
AMCG00020792 mRNA downstream 753401 33197632 ~ 33207776 (-) True AMCG00020792
AMCG00020790 mRNA downstream 804616 33146461 ~ 33156561 (-) True AMCG00020790
AMCG00020788 mRNA downstream 980652 32962541 ~ 32980525 (-) True AMCG00020788
AMCG00020787 mRNA downstream 1134548 32825655 ~ 32826629 (-) True AMCG00020787
AMCG00020804 mRNA upstream 30618 33992809 ~ 33995725 (-) True AMCG00020804
AMCG00020805 mRNA upstream 60828 34023019 ~ 34027562 (-) True AMCG00020805
AMCG00020803 mRNA upstream 94763 34056954 ~ 34075604 (-) True AMCG00020803
AMCG00020807 mRNA upstream 150452 34112643 ~ 34113689 (-) True AMCG00020807
AMCG00020811 mRNA upstream 246718 34208909 ~ 34211086 (-) True AMCG00020811
TU82216 other downstream 592072 33368625 ~ 33369105 (-) True G65756
TU82127 other downstream 1069684 32886364 ~ 32891493 (-) True G65679
TU82083 other downstream 1304158 32655134 ~ 32657019 (-) True G65641
TU82051 other downstream 1350482 32607862 ~ 32610695 (-) True AMCG00020774
TU81960 other downstream 1596035 32361235 ~ 32365142 (-) True G65549
TU82397 other upstream 260124 34222315 ~ 34239697 (-) False AMCG00020810
TU82568 other upstream 846583 34808774 ~ 34814169 (-) False AMCG00020836
TU82585 other upstream 900428 34862619 ~ 34865305 (-) True G66054
TU82718 other upstream 1187377 35149568 ~ 35170179 (-) False AMCG00020853
TU82719 other upstream 1200623 35162814 ~ 35170179 (-) True AMCG00020853

Expression Profile