RNA id: TU82462



Basic Information


Item Value
RNA id TU82462
length 223
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G65954
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34512657 ~ 34512879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttcattttaattaataagcaAGAGAAGTGTTTAGGAGTTACCCAaatcagacacaggacaggtgagagagagagaaagctatTTTGTTGCGTTTCCACTTTCAGAAAGTCTTAGCATTTCTGatcttgtttttagatttgccttaattgaagtaaatcttATTTCTAGtacttaattgtagttaattcagtccagctgaACTGAGTCACTGACTCCACCTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82380 lncRNA upstream 32534 34416595 ~ 34480123 (+) True G65891
TU82362 lncRNA upstream 245557 34239889 ~ 34267100 (+) True G65877
TU82357 lncRNA upstream 250728 34222346 ~ 34261929 (+) True G65873
TU82308 lncRNA upstream 450062 34062152 ~ 34062595 (+) True G65831
TU82306 lncRNA upstream 461620 34049994 ~ 34051037 (+) True G65829
TU82464 lncRNA downstream 1167 34514046 ~ 34515896 (+) True G65956
TU82472 lncRNA downstream 13988 34526867 ~ 34527075 (+) True G65962
TU82489 lncRNA downstream 164032 34676911 ~ 34732379 (+) True G65978
TU82515 lncRNA downstream 234014 34746893 ~ 34748114 (+) True G65994
TU82517 lncRNA downstream 236248 34749127 ~ 34749343 (+) True G65996
AMCG00020826 mRNA upstream 10455 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020827 mRNA upstream 19267 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 37012 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020824 mRNA upstream 55756 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 60930 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020835 mRNA downstream 337783 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 365811 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 368612 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020844 mRNA downstream 406939 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 422136 34935015 ~ 34936792 (+) True AMCG00020843
TU82376 other upstream 101037 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 453192 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 552975 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1404231 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1523212 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 271333 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 454965 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 650934 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1234346 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1354514 35867393 ~ 35908402 (+) True G66362

Expression Profile