RNA id: TU82464


Basic Information

Item Value
RNA id TU82464
length 1851
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G65956
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34514046 ~ 34515896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTtccactaaagaaagaaaaccaagggaaactgctagtaggaaagtcctgattTGTTtatacctcaatgccaggagtataaggaacaagatattagacctagaagccacagtgctggtgtgtgaaggagtaacagaaacatggcttacagaaaatgatggggatgaatacaagttgaaaggatacacacagtttaggacagacaggcaaaatcgaagaggtggtgggggaacattatatatcagaaacgacattgaggcagaagaactcaaatctgtaatgaaacagaatcattgtgggttaaacttttaaataaaagatctggaggattagtggtaggagtgtgttacagacaacccaattcagatattcagaaagatgttgcattgtacaatgtaatcaggactgcatgtagcaaggatgtggctgttataatgggggatttcaattttgcaaacatagactgggaaagcccagtttcgattgcagaagcagaaatagaaatggttgagaaggcaaattactgctttctaactcaatttgtcagggaaccaaccagagagagtgatTTGATACGGAAAGACACTAGTTACAGATCCactggcaaactgtgatcacaatatggttaactttgaggcattctttcaaaaaacaaggaccaagtcaaaaacaatggtctacaattttagaaaagcaaatcttGAAGGTATAAggcagcacaaaacaaaatacaaagaatatgttgaactgcaaagagatgttaagtgagggatcaggaaagcaaagagggaaatagaaagaaacagctcttggagctaaaattaatgcaactaagagcttttttcaatactacaacagcaagaggtcaataaaggaggaagttaaacagataaagggcaaacatggaagtatcttggaaaacgaacaagaagTGGCAAaagttctaaatgagtatttcacagaggtttttacaaaagaaaagacagataacatgccacaggttaacaatcagtccagtcaaaccctaagagagatcaggataaatgaggaggaggtactaaagggactagcagaattaaaaaccaacaaatcacctgggccagatggtatatttccaacagtacttaaagaaatgagggaaattatttattagctaactaaactattccaaaagacacttagaacaggggatgtgccaactggtcagaaaactgctaatgtcacaccaatccacaagaaaggggacaaaactgagccaggaaattacagaccaatcagtctcacctgcattacttatAACATTTTGGGAAAAATTATTAGACTGAAAatcgaggagcatcttaatcttggagatagtcagcatgggtttagatgaggcagatcatgtcttactaatctattagagttctttgaacatgcaactgcagctgtagatcatgtgaaagcatatgatatgatatacttagattttcaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtataggaaacagagggtgtcgataagaggagtcgcttctaactggagtgaggttgttagtggagttccacagggatcagtattagggcctttgctgtttctaatctatgttaatgatctggactctgcgatagttagcaaacttgtcaaatttgcagatgatagtaaaataggtggctcagcagttATAATTTccgcagcacaggctattcaaaagGACtaagataatattcagttgtgggtcgacacctggcagatgaaattcagtgtggacaaN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82462 lncRNA upstream 1167 34512657 ~ 34512879 (+) True G65954
TU82380 lncRNA upstream 33923 34416595 ~ 34480123 (+) True G65891
TU82362 lncRNA upstream 246946 34239889 ~ 34267100 (+) True G65877
TU82357 lncRNA upstream 252117 34222346 ~ 34261929 (+) True G65873
TU82308 lncRNA upstream 451451 34062152 ~ 34062595 (+) True G65831
TU82472 lncRNA downstream 10971 34526867 ~ 34527075 (+) True G65962
TU82489 lncRNA downstream 161015 34676911 ~ 34732379 (+) True G65978
TU82515 lncRNA downstream 230997 34746893 ~ 34748114 (+) True G65994
TU82517 lncRNA downstream 233231 34749127 ~ 34749343 (+) True G65996
TU82516 lncRNA downstream 233602 34749498 ~ 34750151 (+) True G65995
AMCG00020826 mRNA upstream 11844 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020827 mRNA upstream 20656 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 38401 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020824 mRNA upstream 57145 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 62319 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020835 mRNA downstream 334766 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 362794 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 365595 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020844 mRNA downstream 403922 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 419119 34935015 ~ 34936792 (+) True AMCG00020843
TU82376 other upstream 102426 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 454581 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 554364 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1405620 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1524601 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 268316 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 451948 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 647917 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1231329 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1351497 35867393 ~ 35908402 (+) True G66362

Expression Profile