RNA id: TU82489


Basic Information

Item Value
RNA id TU82489
length 3274
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G65978
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34676911 ~ 34732379 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctctgtcAAAGCATAAATGTCTGAAAAATGTCCTTAGGCACTGCCTACTCTTAGTgatcactttaaattaaaaggaacTGAAATAAGGCAATACAATGGGGTCTTGTCCAATTCTGGTATTAACTCCATCGACAACAGTGCAGACCTCTGATCCTTACaggtatttaaaacaaaccaaccaacacAAGAGTATTAGGTTTTATACAGTGAATTATTAAAGTCTAATCAAACCTAATTCTGCACTGCATAGCAATGCACTGGACACACCTGGATGAATCATATATGTGCACTACGAATGGATGCCCCAGACCAGTGTTCTACTGTGGCTTCAGACCATTttagttatatataaaatgtcgagagagaaaaaaaaaaaaaagcttttcatagttaacattttaattgcgTTTATACAGTTTCAGAACATCTGCACAGACTTACTGTTTggttatttacatacataacaGTATTGTAATAGCCctccaataaaacaaaaggaaaaaagtggaatgcaaaaaatgtaaaaatccctAATTTGTGTAAGTACAtcaaatttgtgaaaaacaaaataactagtAATAGTATTGTGCAATATTTGTCTGCCTTACATAAAAGAAAAGTGGCAGTAATCCCTGCAATTggtttagttaaaaaaaaagaaaaaaaagccaacATCCAATACTTTTCATAAAAATTTTCACAAATGCAATAGGTCCTTAAACTTGTCACATGATTATTTCTTATCCCCTCCTTAGGGTCTCTTTCCTGTATTGGACACACGGACacgcaaaaaaaacaaccatctCATGTTGACAATCCAAATGACATGAATcccaaaataatgaaaaaaaaaaacaaccccaaattaatataaaaagattGGTTTCTTTCAATTTCACTGTAGAGAGAAAAAGTCactacatgtattttgttttccttttctgtataCGTACGAAAGGCATAGTCCTTTTTTTGTTGAATCGgatactgtctgtctgtgtgaacGCGTGATCACTGCGCTTGGTATCCCGGCGAGCCAAATCCTGCCTGGTTAGCTATCACACAGCCATTCAGTCCCTGTGGGGGCTCAACCCTCATGTTAGCACCCGTCCACGCAGCGCTGGCCTGTGTTTGACTAGACAAAGGAAGAGAAAATACCAACGTAAGGAGGACGTCAAGGAGGAACTGGGAACGAACATAGCGGCCAGTCAATTAAACCTTTTCCAGCTTCTCGATTACGAGGATTTTTAAGGATTTCTGTTCTACAACCAGTTTGTGGACACCACCTTTCAACAAGtggcagagaagaaaaataaaatgagggaACTAAAACACGCTGCAGGCATGACTTAAATTCTTCCTAAAAGGGCTTACTTGATCTGCACTGAGATTACTTGGCTAGGGAGGCCAGAATGGCTGGGGTATTACAAAAGAGGCCTGACATTACATGGGAGTAGGGAATCGCTTACTTAAAAATCACTGGACAAGcagtgtgtggggtggggggcacaGGGGTGGACCACAATACATTCAGGCtccacacaacacaccacaagAGACTGGCGCATGAAGAATACAATTTACTCGATCACAGCCCATGCTGTGAAACTCATTTAGTCGAGGTTTCACAAATGCCAGTTCCTCCTACTGAGCATCAGATCCCTTTTGTgccatttaaatcaaatcaaaatctgCAGCAGGACCCCTCCAGTTCGCAGTTTGAGccaatgtgcattttatttttgccccCAGTAGTTGTAATGCAACCTGTGCCAATTCTGCAGGTAGTACCCCAGTTCATTGCGttccaatatattttaatatctccGCTCCAGGTcaattgtaaaaaataagtataaatacattcattaggGAATTTTATTTGCAGTTGTATAAAGTAAAGCTACTGGAATATGCAGTCAAGTCCATAAGCAGCTAAGGAGGAAGCGAAGCGTCCAAGAAATACCAAATCTCACACACTTGTCCTGGGCTTGGTTTCACAGTCATTCACTGAAGTCAAACCAAACCAGGGTCTCCCAACCATGGCTGCACAGCTTGGCCTGGAAGGTGGGGTTGACCGGACCAGTGAGGCAATCCTCAAACCTACAGACCGTTCTAGGACTTCACTGAACAAGCGCGATGGCAGAGATCCATTCGGGTTTCTCATCTTCTAAAGATTTATACAAATTGGTCCCACACGTGTAGTCTAAAAGCTTTAAAACtttatagtttaaaatgttaaaaaataaaaatcaggacTGGTGATGCAAAACTCCTGTCCTACACTGGTCTGATAGGTGTGCGTCACCCACACTGATCGCAGGATTAGCTTGGCATCAGAACTAGCTGTGCTGCCTCAGTCAAAATAGTGTAAGAAAACCAAACAATCCTGCCCCCAATTGAAAAAGACTGCAATACttaaaatgatttcaaacaTGGTGGAAATAAGTTTGtggcattaaaaatgtaaagaataaaagTCATATGTACACGAGTTTAATTTCACCACAAAACTCATGGAGACATCACAGGCAGAGACTTTGACAAGCACTGGGTCAGAAAGCACAGTGTGCAGAGCACTGCCCTAACTAATGAGGACCAAGACTACCCCTTCCCCCATGCAAAACACCTCACAATTACCATCAACAGATTCCATGCAATGTAACACTTCCACACAGCTGTTAGGCAAAAAAACCAAACACTGGGCGTAAAAGGGGGAAAGGTTGTGTTCAAGGTGCTGCTACAGAGTTACAAATCTCCAGGGTTtgcaagataaaataaaactaaacctaAAAATAACTTTCTCCTTAGTCTATCCAGCCAAGAAGCAGATCTTCTGGGGTGGGGGTGTTCTTTTACACTGTTGCCTTGATGCTCCTGCAGCCCAATTTTTTACCGACACAGCCAGGTATGCAGTAACATTACCCGTTTATGCAAACCAACATGTGTCCTCCCCGTTTTGAGTGGCTGCTATGGCCCCTGGTTTGTCTGCACGAGAAGGcacgtggggggggggggggggggggggaagctgCTCCTGTCAGGGAACTCATTCCCTGTCGTCCCTTGCCTCCAGCCTACCCTGAAGATTCACACAATTTGCAGTACCATACCAACACCCCCCCAGTCCTGAACCACAAGCACCCTGCCAGGCGAGACCCACAACCCTATAAGTGGCAATGCTGACTAGGTTGGCACAAATAAGACGCAGTAGAGTATGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82472 lncRNA upstream 149836 34526867 ~ 34527075 (+) True G65962
TU82464 lncRNA upstream 161015 34514046 ~ 34515896 (+) True G65956
TU82462 lncRNA upstream 164032 34512657 ~ 34512879 (+) True G65954
TU82380 lncRNA upstream 196788 34416595 ~ 34480123 (+) True G65891
TU82362 lncRNA upstream 409811 34239889 ~ 34267100 (+) True G65877
TU82515 lncRNA downstream 14514 34746893 ~ 34748114 (+) True G65994
TU82517 lncRNA downstream 16748 34749127 ~ 34749343 (+) True G65996
TU82516 lncRNA downstream 17119 34749498 ~ 34750151 (+) True G65995
TU82612 lncRNA downstream 292624 35025003 ~ 35026229 (+) True G66072
TU82704 lncRNA downstream 415835 35148214 ~ 35149418 (+) True AMCG00020855
AMCG00020826 mRNA upstream 174709 34498286 ~ 34502202 (+) True AMCG00020826
AMCG00020827 mRNA upstream 183521 34481379 ~ 34493390 (+) True AMCG00020827
AMCG00020819 mRNA upstream 201266 34462466 ~ 34475645 (+) True AMCG00020819
AMCG00020824 mRNA upstream 220010 34452211 ~ 34456901 (+) True AMCG00020824
AMCG00020825 mRNA upstream 225184 34450528 ~ 34451727 (+) True AMCG00020825
AMCG00020835 mRNA downstream 118283 34850662 ~ 34865362 (+) True AMCG00020835
AMCG00020840 mRNA downstream 146311 34878690 ~ 34879805 (+) True AMCG00020840
AMCG00020842 mRNA downstream 149112 34881491 ~ 34892993 (+) True AMCG00020842
AMCG00020844 mRNA downstream 187439 34919818 ~ 34927630 (+) True AMCG00020844
AMCG00020843 mRNA downstream 202636 34935015 ~ 34936792 (+) True AMCG00020843
TU82376 other upstream 265291 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 617446 34059111 ~ 34059465 (+) True G65830
TU82274 other upstream 717229 33954806 ~ 33959682 (+) False AMCG00020796
TU82157 other upstream 1568485 33107873 ~ 33108426 (+) True G65705
TU82142 other upstream 1687466 32946731 ~ 32989445 (+) True G65691
TU82530 other downstream 51833 34784212 ~ 34787474 (+) True G66008
TU82596 other downstream 235465 34967844 ~ 35008322 (+) True G66060
TU82706 other downstream 431434 35163813 ~ 35164985 (+) True G66149
TU82915 other downstream 1014846 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 1135014 35867393 ~ 35908402 (+) True G66362

Expression Profile